Jatropha Genome Database

JcCD0055602.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0055602.10 - phase: 2 /pseudo/partial
         (114 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC147501_20.1 hypothetical protein AC147501.9 80184-71093 E...    54   2e-08

>IMGA|AC147501_20.1 hypothetical protein AC147501.9 80184-71093 E
           EGN_Mt090430 20090702
          Length = 1284

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 37/66 (56%)

Query: 44  TFHLNPKLESAHDNIPTYYVVFSNYNDYDSVSRIFCATRTCLVHCSLDTETESMVKKVLS 103
           TF +  +  S H  +P + ++ S+  D   +SR   A R C+  CSLDT+TE  V  +LS
Sbjct: 794 TFLVETETGSIHHQLPNFGLIVSDREDNSCISRTLLAARNCIARCSLDTQTEWAVGSILS 853

Query: 104 VLKMEE 109
            + MEE
Sbjct: 854 AVDMEE 859