Jatropha Genome Database

JcCD0054966.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0054966.10 - phase: 0 
         (96 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g140450.1 early flowering 3, related chr03_pseudomole...   115   4e-27

>IMGA|Medtr3g140450.1 early flowering 3, related
          chr03_pseudomolecule_IMGAG_V3 36337998-36332692 E
          EGN_Mt090430 20090702
          Length = 688

 Score =  115 bits (289), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 63/75 (84%), Gaps = 2/75 (2%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFNHAVLPLNPSK 60
          MKRG DDEK+MGP+FPRLHV DTEKGGPRAPPRNKMALYEQ SIPSQRFN  + P +P+ 
Sbjct: 1  MKRGNDDEKVMGPLFPRLHVGDTEKGGPRAPPRNKMALYEQFSIPSQRFN--LPPHHPNT 58

Query: 61 ASNLIPAASSSQVAV 75
          + N +P +SSSQ AV
Sbjct: 59 SINTVPPSSSSQGAV 73