Jatropha Genome Database

JcCD0053272.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0053272.10 + phase: 0 /pseudo/partial
         (177 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g020710.1 hypothetical protein chr05_pseudomolecule_I...    69   2e-12
IMGA|Medtr3g163740.1 DNA polymerase III clamp loader subunit, C-...    64   3e-11

>IMGA|Medtr5g020710.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 7831697-7834680 H
           EGN_Mt090430 20090702
          Length = 686

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 18  QIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMD 77
           +I++VL  I  KE + L   FA +IA KS ++LR AIL+ E CR   YPF+  Q I P+ 
Sbjct: 596 EIIEVLTQIANKEEMDLSMNFAMKIATKSKQNLREAILALEACRAHNYPFSEEQPI-PVG 654

Query: 78  WEEYVSEIATDIMREQS 94
           WE+ V E+AT+I+ + S
Sbjct: 655 WEKIVIEVATEILTDPS 671


>IMGA|Medtr3g163740.1 DNA polymerase III clamp loader subunit,
           C-terminal chr03_pseudomolecule_IMGAG_V3
           43063765-43070872 E EGN_Mt090430 20090702
          Length = 800

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 18  QIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMD 77
           QIVK+LE I ++EG++L       I  +S  +LR+AI S E     +     +  +    
Sbjct: 613 QIVKILEYIVQEEGIKLSHESIKSIVLRSKNNLRQAIRSLEATYRNKNALNDDDLVL-TG 671

Query: 78  WEEYVSEIATDIMREQSPKKLFQVRGKLYELLINCIPPEII 118
           WE+ +  IA +I+ EQSP++L+ +R KL  L+I+ +PP+ I
Sbjct: 672 WEDDILNIARNIITEQSPRQLYAIRKKLQSLMIHDVPPDFI 712