Jatropha Genome Database

JcCD0051435.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0051435.10 - phase: 2 /pseudo/partial
         (218 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g046610.1 Intron-binding protein aquarius, putative c...   373   e-104

>IMGA|Medtr1g046610.1 Intron-binding protein aquarius, putative
           chr01_pseudomolecule_IMGAG_V3 10939663-10929558 E
           EGN_Mt090430 20090702
          Length = 1467

 Score =  373 bits (958), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/205 (87%), Positives = 193/205 (94%), Gaps = 1/205 (0%)

Query: 14  PGLKEFDFLI*SSLVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP 73
           P  +  DFLI   +VS+FEKQQSQKEAINALPLYPNEQIMWDES+VPSINYSGEGCLALP
Sbjct: 444 PWSERVDFLI-EIMVSYFEKQQSQKEAINALPLYPNEQIMWDESVVPSINYSGEGCLALP 502

Query: 74  KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGETAFRGWSRMAVP 133
           KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYIN +GETAFRGWSRM VP
Sbjct: 503 KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINIDGETAFRGWSRMGVP 562

Query: 134 IKEFKIAEVKQPNIGEVKPSSVTAEVTFSISSYKSQIRSEWNALKEHDVLFLLSIRPSFE 193
           IKEF+IAEVKQPNIGEVKPSSVTA+VT+SISSY+S IRSEW+ALKEHDVLFLL+IRPSFE
Sbjct: 563 IKEFRIAEVKQPNIGEVKPSSVTAKVTYSISSYRSHIRSEWDALKEHDVLFLLTIRPSFE 622

Query: 194 PLSAEEAGKATVPQRLGLQYVRGCE 218
           PLSAEE  KA+VPQ+LGLQYVRGCE
Sbjct: 623 PLSAEEENKASVPQKLGLQYVRGCE 647