Jatropha Genome Database

JcCD0051196.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0051196.10 - phase: 0 /pseudo/partial
         (309 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g043930.1 Cyclin-like chr08_pseudomolecule_IMGAG_V3 9...   132   2e-31

>IMGA|Medtr8g043930.1 Cyclin-like chr08_pseudomolecule_IMGAG_V3
           9647497-9639961 E EGN_Mt090430 20090702
          Length = 1025

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 67/77 (87%), Gaps = 1/77 (1%)

Query: 1   QSTNLLDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSX 60
           QS NL+DNIWAEQRRLEA+KLYYR+L  MC AEAQIL   NLTSLLTNERFHRCMLACS 
Sbjct: 484 QSANLMDNIWAEQRRLEAMKLYYRLLATMCRAEAQIL-GNNLTSLLTNERFHRCMLACSA 542

Query: 61  ELVLAXHKTXTMLFPAV 77
           ELVLA HKT TMLFPAV
Sbjct: 543 ELVLATHKTVTMLFPAV 559



 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 59/72 (81%), Positives = 66/72 (91%), Gaps = 1/72 (1%)

Query: 193 KRSCPDYRSVLVERNSFTSPVKDRLLAFSNLKSKL-PPPLQSAFASPTRPNPGGGGETCA 251
           KR C + R+VLVERNSFTSPVKDRLL  SNLKSKL PPPLQSAFASPT+PNPGGGGETCA
Sbjct: 676 KRLCTENRNVLVERNSFTSPVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCA 735

Query: 252 ETGINVFFTKVL 263
           ETGI+VFF+K++
Sbjct: 736 ETGISVFFSKIV 747