Jatropha Genome Database

JcCC0408522.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCC0408522.10 - phase: 0 /pseudo/partial
         (260 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g043930.1 Cyclin-like chr08_pseudomolecule_IMGAG_V3 9...   406   e-114

>IMGA|Medtr8g043930.1 Cyclin-like chr08_pseudomolecule_IMGAG_V3
           9647497-9639961 E EGN_Mt090430 20090702
          Length = 1025

 Score =  406 bits (1044), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/233 (86%), Positives = 216/233 (92%), Gaps = 2/233 (0%)

Query: 1   EAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVI 60
           EAQIL   NLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVI
Sbjct: 516 EAQIL-GNNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVI 574

Query: 61  ESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSAEINRLGLLAE 120
           ESFIR+EESLPRELRRHLNSLEERLLES+VWEKGSSMYNSL VARP+LSAEINRLG+LAE
Sbjct: 575 ESFIRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSAEINRLGMLAE 634

Query: 121 PMPSLDAIAMRINFSSGGLPPMPSLQKHELCPGQNGDIRSPKRSCPDYRSVLVERNSFTS 180
           PMPSLD IAM+INFS GGLPP+PSL K E  P QNGD+RSPKR C + R+VLVERNSFTS
Sbjct: 635 PMPSLDEIAMQINFSCGGLPPVPSLPKPETLPAQNGDMRSPKRLCTENRNVLVERNSFTS 694

Query: 181 PVKDRLLAFSNLKSK-LPPPLQSAFASPTRPNPGGGGETCAETGINVFFTKVL 232
           PVKDRLL  SNLKSK LPPPLQSAFASPT+PNPGGGGETCAETGI+VFF+K++
Sbjct: 695 PVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIV 747