Jatropha Genome Database

JcCB1007071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1007071.10 + phase: 0 /partial/short
         (33 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g030130.1 Mo25-like chr02_pseudomolecule_IMGAG_V3 828...    56   5e-09
IMGA|Medtr8g148280.1 Armadillo-like helical; chr08_pseudomolecul...    52   6e-08
IMGA|Medtr8g148280.2 Armadillo-like helical chr08_pseudomolecule...    52   8e-08
IMGA|Medtr8g148280.3 Degreening-related gene dee76 protein, puta...    48   1e-06

>IMGA|Medtr2g030130.1 Mo25-like chr02_pseudomolecule_IMGAG_V3
           8281211-8287726 E EGN_Mt090430 20090702
          Length = 337

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           EL+TRHKSTVA FLSKNY+W   D+NSKLLES +YI
Sbjct: 192 ELMTRHKSTVAEFLSKNYEWFFADYNSKLLESSNYI 227


>IMGA|Medtr8g148280.1 Armadillo-like helical;
           chr08_pseudomolecule_IMGAG_V3 36653293-36657701 E
           EGN_Mt090430 20090702
          Length = 417

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           EL+TRHKSTVA FLS NY+W   ++NSKLLES +YI
Sbjct: 270 ELMTRHKSTVAEFLSNNYEWFFDEYNSKLLESSNYI 305


>IMGA|Medtr8g148280.2 Armadillo-like helical
           chr08_pseudomolecule_IMGAG_V3 36653796-36657701 E
           EGN_Mt090430 20090702
          Length = 288

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           EL+TRHKSTVA FLS NY+W   ++NSKLLES +YI
Sbjct: 141 ELMTRHKSTVAEFLSNNYEWFFDEYNSKLLESSNYI 176


>IMGA|Medtr8g148280.3 Degreening-related gene dee76 protein,
          putative chr08_pseudomolecule_IMGAG_V3
          36653796-36657701 E EGN_Mt090430 20090702
          Length = 146

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 28/34 (82%), Gaps = 3/34 (8%)

Query: 3  LTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
          +TRHKSTVA FLS NY+W   ++NSKLLES +YI
Sbjct: 1  MTRHKSTVAEFLSNNYEWFFDEYNSKLLESSNYI 34