Jatropha Genome Database

JcCB1003421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1003421.10 - phase: 0 /pseudo/partial
         (115 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g016730.1 Actin-binding FH2; C2 calcium/lipid-binding...   114   9e-27
IMGA|Medtr5g026810.1 Actin-binding FH2 chr05_pseudomolecule_IMGA...   102   4e-23
IMGA|Medtr8g145580.1 Actin-binding FH2; C2 calcium/lipid-binding...    84   3e-17

>IMGA|Medtr1g016730.1 Actin-binding FH2; C2 calcium/lipid-binding
            region, CaLB; chr01_pseudomolecule_IMGAG_V3
            3303853-3295156 H EGN_Mt090430 20090702
          Length = 1641

 Score =  114 bits (286), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 62/69 (89%)

Query: 1    MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
            M+VPRVESKLRVF FKMQF SQVS+L++ LN+VNS +EEIRNS KLKRIMQTILSLGNAL
Sbjct: 1443 MKVPRVESKLRVFCFKMQFCSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNAL 1502

Query: 61   NQGTARGKS 69
            N GTARG +
Sbjct: 1503 NHGTARGSA 1511


>IMGA|Medtr5g026810.1 Actin-binding FH2
          chr05_pseudomolecule_IMGAG_V3 10855138-10852228 E
          EGN_Mt090430 20090702
          Length = 284

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 58/69 (84%)

Query: 1  MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
          M+VPR+ESKLRVF+FK+ F  QVSDLRK+LN +N    E++ S KL++IMQTIL+LGNAL
Sbjct: 28 MKVPRIESKLRVFAFKITFSGQVSDLRKNLNTINDATREVKESVKLRQIMQTILTLGNAL 87

Query: 61 NQGTARGKS 69
          NQGTARG +
Sbjct: 88 NQGTARGSA 96


>IMGA|Medtr8g145580.1 Actin-binding FH2; C2 calcium/lipid-binding
           region, CaLB; chr08_pseudomolecule_IMGAG_V3
           35409574-35425027 E EGN_Mt090430 20090702
          Length = 1180

 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 50/69 (72%), Gaps = 17/69 (24%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           M+VPRVE+KLRVFSF++QF+SQ                 IRNS KLKRIMQTIL+LGNAL
Sbjct: 939 MKVPRVEAKLRVFSFRIQFYSQ-----------------IRNSVKLKRIMQTILTLGNAL 981

Query: 61  NQGTARGKS 69
           NQGTARG +
Sbjct: 982 NQGTARGSA 990