Jatropha Genome Database

JcCB0979461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0979461.10 - phase: 2 /partial
         (123 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g129930.1 ThiJ/PfpI chr04_pseudomolecule_IMGAG_V3 310...   157   8e-40

>IMGA|Medtr4g129930.1 ThiJ/PfpI chr04_pseudomolecule_IMGAG_V3
           31047413-31044194 E EGN_Mt090430 20090702
          Length = 451

 Score =  157 bits (398), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 89/113 (78%)

Query: 11  LQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAVLHNQGLLKDKKATAHPSVEN 70
           L G  AGA+R            EQ++AGRIYGAVCSSPA+LH QGLLKDKKATAHPS  N
Sbjct: 334 LPGGTAGAERLSKSRILKKLLKEQNSAGRIYGAVCSSPAILHKQGLLKDKKATAHPSALN 393

Query: 71  QLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLVF 123
           +L +  +NDA VVIDGKVITS+G ATVTDFA+AIVSKLFG+ RARSVAEGLVF
Sbjct: 394 KLKDGAVNDAVVVIDGKVITSEGLATVTDFALAIVSKLFGNGRARSVAEGLVF 446



 Score = 62.4 bits (150), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 5   FFFLSELQGEIAGAQRXXXXXXXXXXXXEQDAAGRIYGAVCSSPAV-LHNQGLLKDKKAT 63
            F L  L G + G+ R            +Q    R++GA+ ++PAV L   GLLK KK T
Sbjct: 124 IFDLIALPGGMPGSARLRDCDALRIITCKQAEENRLFGAINAAPAVTLLPWGLLKRKKIT 183

Query: 64  AHPSVENQLSNNVINDAKVVIDGKVITSKGHATVTDFAMAIVSKLFGHARARSVAEGLVF 123
            HP+  ++L       + + +   + TS+G  T   FA+ +V +LFG + AR VAE L+ 
Sbjct: 184 CHPAFFHKLPTFWAVKSNIQVSNGLTTSRGPGTAYMFALTLVEQLFGESIAREVAEFLLM 243