Jatropha Genome Database

JcCB0971961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0971961.10 - phase: 0 
         (138 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g087270.1 Ferredoxin chr03_pseudomolecule_IMGAG_V3 20...   195   7e-51

>IMGA|Medtr3g087270.1 Ferredoxin chr03_pseudomolecule_IMGAG_V3
           20700853-20708421 E EGN_Mt090430 20090702
          Length = 739

 Score =  195 bits (495), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 99/138 (71%), Positives = 105/138 (76%), Gaps = 3/138 (2%)

Query: 1   MGLGILASRVIRPHATKPRNLLLLRSIVTKPELQSXXXXXXXXXXXXXXXXXXXXXXXGA 60
           MGLG+LAS+ +RP  T+   LLLLRSI TKPEL+                        GA
Sbjct: 1   MGLGLLASKTLRPTTTR---LLLLRSITTKPELRKPEPAAQPQPEQPLVDLTPRTPVAGA 57

Query: 61  RVHFPNPDDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVE 120
           RVHF NPDDAIEVFVDGYPVKIPKG +VLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVE
Sbjct: 58  RVHFTNPDDAIEVFVDGYPVKIPKGFSVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVE 117

Query: 121 VEKSPKPVASCAMPALPG 138
           VEKSPKPVASCAMPALPG
Sbjct: 118 VEKSPKPVASCAMPALPG 135