Jatropha Genome Database

JcCB0968951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0968951.10 - phase: 0 
         (250 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g023440.1 Zinc finger, C2H2-type chr01_pseudomolecule...   184   4e-47
IMGA|Medtr1g135260.1 Zinc finger, C2H2-type chr01_pseudomolecule...   145   2e-35
IMGA|Medtr5g106680.1 Zinc finger, C2H2-type chr05_pseudomolecule...    70   7e-13
IMGA|Medtr7g118490.1 Zinc finger, C2H2-type chr07_pseudomolecule...    69   2e-12
IMGA|Medtr7g118480.1 Zinc finger, C2H2-type chr07_pseudomolecule...    68   3e-12
IMGA|Medtr7g024970.1 Zinc finger, C2H2-type chr07_pseudomolecule...    60   1e-09
IMGA|Medtr2g114530.1 Zinc finger, C2H2-type chr02_pseudomolecule...    58   3e-09
IMGA|Medtr4g036160.1 Zinc finger, C2H2-type chr04_pseudomolecule...    54   1e-07
IMGA|Medtr8g105670.1 Zinc finger, C2H2-type chr08_pseudomolecule...    51   5e-07
IMGA|Medtr4g098570.1 Zinc finger, C2H2-type chr04_pseudomolecule...    50   1e-06
IMGA|Medtr5g046750.1 Zinc finger, C2H2-type chr05_pseudomolecule...    49   3e-06

>IMGA|Medtr1g023440.1 Zinc finger, C2H2-type
           chr01_pseudomolecule_IMGAG_V3 5223325-5222425 E
           EGN_Mt090430 20090702
          Length = 232

 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 128/261 (49%), Positives = 149/261 (57%), Gaps = 44/261 (16%)

Query: 1   MALDALNSPTTATPSFQFEDSSGLHSYLAEPWTKRKRSKRSHHQPTEEEYLALCLVMLAR 60
           MAL+ALNSPT+ TP F F++ +        PWTKRKRSKRS    TEEEYLALCL+MLAR
Sbjct: 1   MALEALNSPTSTTPKFTFDEPN-------LPWTKRKRSKRSR-SCTEEEYLALCLIMLAR 52

Query: 61  GXXXXXXXXXXXXXXXXXXPTPSRQIPAALNNSEE--KPSYKCSVCNKAFSSYQALGGHK 118
           G                    P    P  ++N+    K SYKCSVCNK FSSYQALGGHK
Sbjct: 53  GHTNRHDF------------NPLNPPPTTIDNNNNNTKLSYKCSVCNKEFSSYQALGGHK 100

Query: 119 ASHRK--LAGNEDQXXXXXXXXXXXXXVSNGSG-KTHECSLCHKCFPTGQALGGHKRCHY 175
           ASHRK  + G  D               +NG G ++HECS+CH+ FPTGQALGGHKRCHY
Sbjct: 101 ASHRKNSVGGGGDDHPSTSSAATTSSANTNGGGVRSHECSICHRSFPTGQALGGHKRCHY 160

Query: 176 E---GGSAAAEKXXXXXXXXXXXXXXXHSLSQSQREFDLNLPALPEFAADFFISGDDEVM 232
           E   GG A+A                  S    QR+FDLN+PA PEFA      G+DEV 
Sbjct: 161 EGVVGGGASAVTVSEGMG----------STHSHQRDFDLNIPAFPEFANKV---GEDEVE 207

Query: 233 SPLPV---KKPRLLVAPKIEV 250
           SP PV   KK R+ V PKIE+
Sbjct: 208 SPHPVMMKKKARVFVVPKIEI 228


>IMGA|Medtr1g135260.1 Zinc finger, C2H2-type
           chr01_pseudomolecule_IMGAG_V3 30191745-30192834 E
           EGN_Mt090430 20090702
          Length = 251

 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/275 (40%), Positives = 134/275 (48%), Gaps = 67/275 (24%)

Query: 1   MALDALNS-PTTAT-------PSFQFEDSSGLHSYLAEPWTKRKRSKRSH----HQPTEE 48
           + L  LNS PT AT       P F+ E++    S +     K+KRSKR      + PTEE
Sbjct: 3   LELQTLNSSPTGATTTIPIPFPRFKQEENQERESLV-----KKKRSKRPRIGIGNPPTEE 57

Query: 49  EYLALCLVMLARGXXXXXXXXXXXXXXXXXXPTPSRQIPAALNNSEEKPSYKCSVCNKAF 108
           EYLALCL+ML++                             + +S  K ++KCSVCNKAF
Sbjct: 58  EYLALCLIMLSQSNNQ-------------------------IQSSPLKLNHKCSVCNKAF 92

Query: 109 SSYQALGGHKASHRKLAGNEDQXXXXXXXXXXXXXVSNGSGKTHECSLCHKCFPTGQALG 168
            SYQALGGHKASHRK + +E+Q             VS  + K HECS+CHK FPTGQALG
Sbjct: 93  PSYQALGGHKASHRK-SSSENQSTTVNETIS----VSVSTSKMHECSICHKSFPTGQALG 147

Query: 169 GHKRCHYEGG-SAAAEKXXXXXXXXXXXXXXXHSLSQSQREFDLNLPA-LPEFAADFFIS 226
           GHKRCHYEG  +                     S S S R FDLNLPA L EF +     
Sbjct: 148 GHKRCHYEGVINNNHNHNNSNSSGITVSDAGAASSSISHRGFDLNLPAPLTEFWSPVGFG 207

Query: 227 GDD----------------EVMSPLPV--KKPRLL 243
           G D                EV SPLPV  K+PRL 
Sbjct: 208 GGDSKKNKVNVNLAGINEQEVESPLPVTAKRPRLF 242


>IMGA|Medtr5g106680.1 Zinc finger, C2H2-type
           chr05_pseudomolecule_IMGAG_V3 42922785-42923624 H
           EGN_Mt090430 20090702
          Length = 279

 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 28/111 (25%)

Query: 94  EEKPSYKCSVCNKAFSSYQALGGHKASHRKLAG------------------------NED 129
           +E   + CS CNK F S+QALGGH+ASH+ + G                        ++D
Sbjct: 125 DEDDQFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTTTITASSNSTTGRTFMTPHDD 184

Query: 130 QXXXXXXXXXXXXXVSNGSGKT----HECSLCHKCFPTGQALGGHKRCHYE 176
                         V+N         H+CS+C + F TGQALGGHKRCH+E
Sbjct: 185 TMTRGGNVEVEGEAVNNNEMINCIIGHKCSICLRVFSTGQALGGHKRCHWE 235


>IMGA|Medtr7g118490.1 Zinc finger, C2H2-type
           chr07_pseudomolecule_IMGAG_V3 27999583-27998806 F
           EGN_Mt090430 20090702
          Length = 165

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 93  SEEKPSYKCSVCNKAFSSYQALGGHKASHRKLAGNEDQXXXXXXXXXXXXXVSNGSGKTH 152
           S E   Y+C  CNK FSS+QALGGH+ASH+++   E +                   K H
Sbjct: 28  SYENGEYECKTCNKKFSSFQALGGHRASHKRMKLAEGEELKEQAKSLSLW----NKPKMH 83

Query: 153 ECSLCHKCFPTGQALGGHKRCH 174
           ECS+C   F  GQALGGH R H
Sbjct: 84  ECSICGMGFSLGQALGGHMRKH 105


>IMGA|Medtr7g118480.1 Zinc finger, C2H2-type
           chr07_pseudomolecule_IMGAG_V3 27993959-27993331 F
           EGN_Mt090430 20090702
          Length = 172

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 47/79 (59%), Gaps = 11/79 (13%)

Query: 99  YKCSVCNKAFSSYQALGGHKASHR--KLAGNEDQXXXXXXXXXXXXXVSNGSG-KTHECS 155
           Y+C  CNK F S+QALGGH+ASH+  KL G+E               +S G+  K HECS
Sbjct: 44  YECKTCNKKFPSFQALGGHRASHKRSKLEGDE--------LLTNSTSLSLGNKPKMHECS 95

Query: 156 LCHKCFPTGQALGGHKRCH 174
           +C + F  GQALGGH R H
Sbjct: 96  ICGQNFSLGQALGGHMRRH 114


>IMGA|Medtr7g024970.1 Zinc finger, C2H2-type
           chr07_pseudomolecule_IMGAG_V3 5972867-5972029 F
           EGN_Mt090430 20090702
          Length = 184

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 13/79 (16%)

Query: 99  YKCSVCNKAFSSYQALGGHKASHRK---LAGNEDQXXXXXXXXXXXXXVSNGSGKTHECS 155
           ++C  CN+ F S+QALGGH+ASH+K   +  N D                    KTHECS
Sbjct: 40  FECKTCNRQFPSFQALGGHRASHKKPRLMGENIDGQLLHTPPKP----------KTHECS 89

Query: 156 LCHKCFPTGQALGGHKRCH 174
           +C   F  GQALGGH R H
Sbjct: 90  ICGLEFAIGQALGGHMRRH 108


>IMGA|Medtr2g114530.1 Zinc finger, C2H2-type
           chr02_pseudomolecule_IMGAG_V3 27103326-27103951 E
           EGN_Mt090430 20090702
          Length = 133

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 14/83 (16%)

Query: 92  NSEEKPSYKCSVCNKAFSSYQALGGHKASHRKLAGNEDQXXXXXXXXXXXXXVSNGSGKT 151
           N+ ++  +KC  CNK FSS+QALGGH+ASH++                    + N   K 
Sbjct: 27  NTLKECGFKCKTCNKEFSSFQALGGHRASHKR--------------PKLMYKLPNMKPKM 72

Query: 152 HECSLCHKCFPTGQALGGHKRCH 174
           H C +C   F  GQALGGH R H
Sbjct: 73  HPCPICGLEFSIGQALGGHMRKH 95


>IMGA|Medtr4g036160.1 Zinc finger, C2H2-type
           chr04_pseudomolecule_IMGAG_V3 8812372-8810265 H
           EGN_Mt090430 20090702
          Length = 461

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 150 KTHECSLCHKCFPTGQALGGHKRCHY 175
           K HECS+CH+ F +GQALGGHKRCH+
Sbjct: 285 KVHECSICHRSFSSGQALGGHKRCHW 310


>IMGA|Medtr8g105670.1 Zinc finger, C2H2-type
           chr08_pseudomolecule_IMGAG_V3 23397299-23398474 F
           EGN_Mt090430 20090702
          Length = 315

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 53/130 (40%), Gaps = 22/130 (16%)

Query: 48  EEYLALCLVMLARGXXXXXXXXXXXXXXXXXXPTPSRQIPAALNNSEEKPSYKCSVCNKA 107
           EE +A+CL+ML+R                    +  +     L     +  + C  C K 
Sbjct: 158 EEDVAMCLMMLSRDKWSRKMNNVNNVEQEEDEGSVEKISKVKLL-KRVRGKHLCENCGKT 216

Query: 108 FSSYQALGGHKASHRKLAGNEDQXXXXXXXXXXXXXVSNGSG---KTHECSLCHKCFPTG 164
           F S +ALG    SHR +   ++                NG+G   K  EC  C K F +G
Sbjct: 217 FRSSRALG----SHRSICCRDE--------------AKNGNGNDDKIFECPFCFKVFGSG 258

Query: 165 QALGGHKRCH 174
           QALGGHKR H
Sbjct: 259 QALGGHKRSH 268


>IMGA|Medtr4g098570.1 Zinc finger, C2H2-type
           chr04_pseudomolecule_IMGAG_V3 21274337-21273403 H
           EGN_Mt090430 20090702
          Length = 285

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 13/83 (15%)

Query: 99  YKCSVCNKAFSSYQALGGHKASHRKLAGNEDQXXXXXXXXXXXXXVSNGSGKTHECSLCH 158
           Y+C +C K F+S  ALGGHK SHR+                      +   + H C +C+
Sbjct: 79  YECELCGKRFNSGNALGGHKTSHRR-------------SHLQRHDKYDDEKQKHRCPVCN 125

Query: 159 KCFPTGQALGGHKRCHYEGGSAA 181
           K F + +A  GH   H+E GS +
Sbjct: 126 KVFSSNKAFCGHMILHHEKGSKS 148


>IMGA|Medtr5g046750.1 Zinc finger, C2H2-type
           chr05_pseudomolecule_IMGAG_V3 19675613-19674069 E
           EGN_Mt090430 20090702
          Length = 514

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 23/28 (82%)

Query: 152 HECSLCHKCFPTGQALGGHKRCHYEGGS 179
           HEC +C+K F +GQALGGHKR H+ GG+
Sbjct: 436 HECPICNKIFKSGQALGGHKRSHFIGGN 463