Jatropha Genome Database

JcCB0942771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0942771.10 + phase: 0 /pseudo/partial
         (59 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g121140.1 Chorismate synthase chr01_pseudomolecule_IM...    72   6e-14

>IMGA|Medtr1g121140.1 Chorismate synthase
           chr01_pseudomolecule_IMGAG_V3 26335312-26332256 E
           EGN_Mt090430 20090702
          Length = 191

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/47 (74%), Positives = 42/47 (89%)

Query: 1   MKYGVRAVKGGGRSSARETIGRVAPGAIAKKILKQFSGTEVVIGVKR 47
           MKYGVR+V+GGGRSSARETIGRVA GA+AKKILK F+GTE++  V +
Sbjct: 123 MKYGVRSVQGGGRSSARETIGRVASGAVAKKILKNFAGTEILAYVSQ 169