Jatropha Genome Database

JcCB0907471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0907471.10 - phase: 2 /partial
         (85 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g105660.1 Peptidase C19, ubiquitin carboxyl-terminal ...    62   8e-11

>IMGA|Medtr7g105660.1 Peptidase C19, ubiquitin carboxyl-terminal
           hydrolase 2; Ubiquitin carboxyl-terminal hydrolase,
           N-terminal region 2 chr07_pseudomolecule_IMGAG_V3
           24271300-24260562 E EGN_Mt090430 20090702
          Length = 912

 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 1   WYASWEKYVGQGSDDLLVDGQS-PDSQDFHVAPSGMADRPGPINNSEIVEN-GSGGESDD 58
           W+  W +YV Q   +   DG S P+  D  +  S    RP  I+N ++++N GS   S  
Sbjct: 47  WWQHWIEYVNQDQANPSYDGSSFPEHSD--LVSSSAIKRPAGIDNYDLIDNTGSEDSSTG 104

Query: 59  LELARTLLEGRDYVLVPQKVWEKLVQW 85
           +E+  TLLEGRDYVL+P++VW++L +W
Sbjct: 105 IEIHDTLLEGRDYVLLPREVWDQLFKW 131