Jatropha Genome Database

JcCB0902911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0902911.10 - phase: 1 /partial
         (100 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g111520.1 Fumarate lyase; Adenylosuccinate lyase chr0...   129   2e-31
IMGA|Medtr5g089050.1 Fumarate lyase chr05_pseudomolecule_IMGAG_V...    84   2e-17

>IMGA|Medtr7g111520.1 Fumarate lyase; Adenylosuccinate lyase
           chr07_pseudomolecule_IMGAG_V3 26222949-26228352 E
           EGN_Mt090430 20090702
          Length = 530

 Score =  129 bits (325), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 77/97 (79%), Gaps = 10/97 (10%)

Query: 2   QVKWLLKLSQIAEVIEVPNFSEEAQSFLQGLIDGFSLDDALEVKNIEKVTNHDVKAVEYF 61
           ++KWLLKLS+I EV EVP FSE+A+SFL+GLID FS DD  E+K  E++TNHDVKAVEYF
Sbjct: 97  EIKWLLKLSEINEVTEVPAFSEDAKSFLKGLIDDFSEDDVKEIKKFERITNHDVKAVEYF 156

Query: 62  LKKKCQSHPEIAK----------SEDINNLAHALMLK 88
           LK+KCQS+ EIAK          SEDINNLAHALMLK
Sbjct: 157 LKQKCQSNAEIAKVLEFFHFACTSEDINNLAHALMLK 193


>IMGA|Medtr5g089050.1 Fumarate lyase chr05_pseudomolecule_IMGAG_V3
           34561465-34556607 E EGN_Mt090430 20090702
          Length = 439

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 29/97 (29%)

Query: 2   QVKWLLKLSQIAEVIEVPNFSEEAQSFLQGLIDGFSLDDALEVKNIEKVTNHDVKAVEYF 61
           ++K LLK+++I+E+ EVP FSE+A+SFLQGLID F  DD                   YF
Sbjct: 76  KIKRLLKIAEISEITEVPAFSEDAKSFLQGLIDDFGEDD-------------------YF 116

Query: 62  LKKKCQSHPEIAK----------SEDINNLAHALMLK 88
           LK+ CQS+ +IAK          SEDINNLAHALMLK
Sbjct: 117 LKQNCQSNAKIAKVLEFFHFACTSEDINNLAHALMLK 153