Jatropha Genome Database

JcCB0902641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0902641.10 - phase: 0 /pseudo/partial
         (104 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g023650.1 GRIP chr05_pseudomolecule_IMGAG_V3 9317987-...    75   1e-14

>IMGA|Medtr5g023650.1 GRIP chr05_pseudomolecule_IMGAG_V3
           9317987-9321640 E EGN_Mt090430 20090702
          Length = 398

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 3   DLQDALAHRDKELAERDAALNNSKKQIKSIEIKLDSANARHQLEKEAWETNLQNLEESWK 62
           DLQ A+A+ +KELAERD  L N K+QI+S+EIKLDS +A+H  EKE W  +LQN+EE+W+
Sbjct: 105 DLQSAMANNEKELAERDTTLENVKQQIRSLEIKLDSVSAQHLKEKEEWGLSLQNVEETWR 164