Jatropha Genome Database

JcCB0897541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0897541.10 + phase: 2 /pseudo/partial
         (423 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g109610.1 Acetohydroxy acid isomeroreductase; ; chr04...   668   0.0  

>IMGA|Medtr4g109610.1 Acetohydroxy acid isomeroreductase; ;
           chr04_pseudomolecule_IMGAG_V3 24593545-24589657 F
           EGN_Mt090430 20090702
          Length = 580

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/384 (83%), Positives = 343/384 (89%)

Query: 40  SKAVLLLQIGLRKGSRSFAEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYE 99
           +K+ ++++IGLRKGSRSF EAR AGFTEESGTLGDIWETI+GSDLVLLLISD+AQADNYE
Sbjct: 135 AKSDIVVKIGLRKGSRSFNEAREAGFTEESGTLGDIWETISGSDLVLLLISDSAQADNYE 194

Query: 100 KIFSHMKPNSIXXXXXXXXXXXXXXXXXDFPKNISVIAVCPKGMGPSVRRLYVQGKEING 159
           KIFSHMKPNSI                 DFPK+ SVIAVCPKGMGPSVRRLYVQGKEING
Sbjct: 195 KIFSHMKPNSILGLSHGFLLGHLQSVGLDFPKHFSVIAVCPKGMGPSVRRLYVQGKEING 254

Query: 160 AGINSSFAVHQDVDGRAADVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGV 219
           AGINSSFAVHQDVDGRA DVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHG+
Sbjct: 255 AGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGI 314

Query: 220 VECLFRRYTENGMNEDVAYKNTVEXXXXXXXXXXXXXXMLAVYNSLSDEGKRDFETAYSA 279
           VE LFRR+TENGM+ED+AYKNTVE              MLAVYN+LS++GKR+FE AYSA
Sbjct: 315 VESLFRRFTENGMSEDLAYKNTVESITGVISKTISTKGMLAVYNALSEDGKREFEKAYSA 374

Query: 280 AYYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRA 339
           ++YPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE VR+
Sbjct: 375 SFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEVVRS 434

Query: 340 TRPKDDLGPLYPFTAGVFVALMMAQIEVLRKKGHSYSEIINESLIEAVDSLNPFMHARGV 399
           TRP  DLGPLYPFTAGVFVALMMAQIE+LRKKGHSYSEIINES+IE+VDSLNPFMHARGV
Sbjct: 435 TRPAGDLGPLYPFTAGVFVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGV 494

Query: 400 SFMVDNCSTTARLGSRKWAPRFDY 423
           SFMVDNCSTTARLGSRKWAPRFDY
Sbjct: 495 SFMVDNCSTTARLGSRKWAPRFDY 518