Jatropha Genome Database

JcCB0896111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0896111.10 - phase: 0 
         (79 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g005180.1 hypothetical protein chr06_pseudomolecule_I...    68   1e-12
IMGA|Medtr5g034560.1 hypothetical protein chr05_pseudomolecule_I...    56   4e-09

>IMGA|Medtr6g005180.1 hypothetical protein
          chr06_pseudomolecule_IMGAG_V3 176212-180117 H
          EGN_Mt090430 20090702
          Length = 116

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 8/81 (9%)

Query: 1  MGFSG---KPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNPVDKES----ESDHDCSTTP 53
          MGFS    K Q++  LE + KKWVIAGI LR+ LK I T    K      E D + STTP
Sbjct: 1  MGFSKNSKKTQIEKSLESEAKKWVIAGISLRS-LKPINTKMSTKNGAVFDEEDEENSTTP 59

Query: 54 TSEESRISARLTCPPAPKKRK 74
          T++E+RI   ++CPPAP+K+K
Sbjct: 60 TAKEARIPVNMSCPPAPRKKK 80


>IMGA|Medtr5g034560.1 hypothetical protein
          chr05_pseudomolecule_IMGAG_V3 14208554-14207562 F
          EGN_Mt090430 20090702
          Length = 115

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 13/87 (14%)

Query: 1  MGF-SGKPQVDNGLELDC---KKWVIAGIPLRAPL--KKIYTNPVDK----ESESDHDCS 50
          MG  S   QV+ GL  +    +KWVI    LR PL  K I+T P++K    ES  + +CS
Sbjct: 1  MGLLSDNSQVEGGLVENSEKNRKWVIN---LRTPLNLKPIHTIPLEKSKQEESGMEEECS 57

Query: 51 TTPTSEESRISARLTCPPAPKKRKGYV 77
          TTP  E SRI   L CPPAP+KRK  +
Sbjct: 58 TTPRGEGSRIPTTLICPPAPRKRKASL 84