Jatropha Genome Database

JcCB0894111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0894111.10 - phase: 2 /partial
         (233 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g093600.2 Zinc finger, C2H2-type chr08_pseudomolecule...   140   7e-34
IMGA|Medtr8g093600.1 Zinc finger, C2H2-type chr08_pseudomolecule...   139   8e-34

>IMGA|Medtr8g093600.2 Zinc finger, C2H2-type
           chr08_pseudomolecule_IMGAG_V3 20629417-20632618 F
           EGN_Mt090430 20090702
          Length = 517

 Score =  140 bits (352), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/236 (42%), Positives = 115/236 (48%), Gaps = 16/236 (6%)

Query: 1   ITHRAFCDALAEESARATQTXXXXXXXXXXXXXQESEPKVQVDXXXXXXXXXXXXXXXXX 60
           ITHRAFCDALAEE+A++                 ES+ KV                    
Sbjct: 178 ITHRAFCDALAEENAKSQN-------QAVGKANSESDSKV----LTGDSLPAVITTTAAA 226

Query: 61  XXXXXQSAGVISSSISPNHSPELPDNPSPIIEE--ALAPQXXXXXXXXXXXXXXXXXXXX 118
                QS   +SS++      +LP+NP  IIEE   +                       
Sbjct: 227 AATTPQSNSGVSSALE-TQKLDLPENPPQIIEEPQVVVTTTASALNASCSSSTSSKSNGC 285

Query: 119 XXXXXXXXXXXXXXXXXXXXXIQPPQTPAFTDLIRAMAHPD-RPADLAPPSSTEPISLCL 177
                                   PQ PAF+DLIR+M   D RP D + P S+E ISLCL
Sbjct: 286 AATSTGVFASLFASSTASASASLQPQAPAFSDLIRSMGCTDPRPTDFSAPPSSEAISLCL 345

Query: 178 STSHGSSIFGTAGQERRQYAPPPQ-PAMSATALLQKAAQIGAAATNASLLRGFGIV 232
           STSHGSSIFGT GQE RQY P  Q PAMSATALLQKAAQ+GAAATNASLLRG GIV
Sbjct: 346 STSHGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIV 401


>IMGA|Medtr8g093600.1 Zinc finger, C2H2-type
           chr08_pseudomolecule_IMGAG_V3 20629417-20632618 F
           EGN_Mt090430 20090702
          Length = 519

 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/236 (42%), Positives = 115/236 (48%), Gaps = 16/236 (6%)

Query: 1   ITHRAFCDALAEESARATQTXXXXXXXXXXXXXQESEPKVQVDXXXXXXXXXXXXXXXXX 60
           ITHRAFCDALAEE+A++                 ES+ KV                    
Sbjct: 180 ITHRAFCDALAEENAKSQN-------QAVGKANSESDSKV----LTGDSLPAVITTTAAA 228

Query: 61  XXXXXQSAGVISSSISPNHSPELPDNPSPIIEE--ALAPQXXXXXXXXXXXXXXXXXXXX 118
                QS   +SS++      +LP+NP  IIEE   +                       
Sbjct: 229 AATTPQSNSGVSSALE-TQKLDLPENPPQIIEEPQVVVTTTASALNASCSSSTSSKSNGC 287

Query: 119 XXXXXXXXXXXXXXXXXXXXXIQPPQTPAFTDLIRAMAHPD-RPADLAPPSSTEPISLCL 177
                                   PQ PAF+DLIR+M   D RP D + P S+E ISLCL
Sbjct: 288 AATSTGVFASLFASSTASASASLQPQAPAFSDLIRSMGCTDPRPTDFSAPPSSEAISLCL 347

Query: 178 STSHGSSIFGTAGQERRQYAPPPQ-PAMSATALLQKAAQIGAAATNASLLRGFGIV 232
           STSHGSSIFGT GQE RQY P  Q PAMSATALLQKAAQ+GAAATNASLLRG GIV
Sbjct: 348 STSHGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIV 403