Jatropha Genome Database

JcCB0890131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0890131.10 - phase: 2 /partial
         (379 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g139150.1 DNA-directed DNA polymerase B chr07_pseudom...    62   6e-10

>IMGA|Medtr7g139150.1 DNA-directed DNA polymerase B
           chr07_pseudomolecule_IMGAG_V3 33216582-33210461 H
           EGN_Mt090430 20090702
          Length = 1059

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 13/169 (7%)

Query: 18  NKRKREKSLWGSLPFSMTQKGTDESEAVWSNIADACVVEGQDC-IGTSMPRNE--GGKHS 74
           +KR R+   WGSLPFSMT K  ++ E   S +A     E +D  +   + RNE    K+ 
Sbjct: 586 DKRNRQ---WGSLPFSMTGKVNNDGEHATSQVAHLFERETEDSSLSDYLTRNEIKNNKYI 642

Query: 75  DTPMKNPDTDFCQIGDLVGCSVRDLMRRKRCHRIAQQECGNSGVKKVCAVGEHEPDNILM 134
              +    +D  ++  LV CS+RDLMRRKR +R+   E   SG  K   +  H      +
Sbjct: 643 KRNVGEGASDSKEVHSLVNCSLRDLMRRKRSYRVEHDE-RESGTAKKLNLDRHGGTKTCL 701

Query: 135 PNQLDLHAVNEEHGNKPLGS-----ANFRPSITDKQTEFP-EGYSFISV 177
             +L+L  +  +   K L          R ++  ++  FP +  SF+++
Sbjct: 702 WPKLELETMQTDEVEKELQKNSDHEVRSRDNLVCRKQSFPSDSDSFLNI 750