Jatropha Genome Database

JcCB0888501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0888501.10 + phase: 0 /pseudo/partial
         (61 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g140930.1 Calcium-binding EF-hand chr07_pseudomolecul...    70   2e-13
IMGA|Medtr7g140930.2 Calcium-binding EF-hand chr07_pseudomolecul...    69   4e-13

>IMGA|Medtr7g140930.1 Calcium-binding EF-hand
           chr07_pseudomolecule_IMGAG_V3 34026348-34030059 E
           EGN_Mt090430 20090702
          Length = 333

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 19  TDLDKEDKGKISKGEIRDALVHMGVEMGIPPFKEFPLLNDILK 61
           TDLD EDKGKISK +IR ALV MGV+MG+PPF E+P LND+L+
Sbjct: 136 TDLDVEDKGKISKSQIRSALVQMGVDMGVPPFSEYPQLNDLLR 178


>IMGA|Medtr7g140930.2 Calcium-binding EF-hand
          chr07_pseudomolecule_IMGAG_V3 34027096-34030059 E
          EGN_Mt090430 20090702
          Length = 205

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 19 TDLDKEDKGKISKGEIRDALVHMGVEMGIPPFKEFPLLNDILK 61
          TDLD EDKGKISK +IR ALV MGV+MG+PPF E+P LND+L+
Sbjct: 8  TDLDVEDKGKISKSQIRSALVQMGVDMGVPPFSEYPQLNDLLR 50