Jatropha Genome Database

JcCB0860891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0860891.10 - phase: 0 /partial
         (78 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g110840.2 Ribosomal protein S13 chr04_pseudomolecule_...    65   1e-11
IMGA|Medtr4g110840.1 Ribosomal protein S13 chr04_pseudomolecule_...    64   2e-11
IMGA|Medtr3g098290.1 Ribosomal protein S13 chr03_pseudomolecule_...    51   1e-07

>IMGA|Medtr4g110840.2 Ribosomal protein S13
           chr04_pseudomolecule_IMGAG_V3 25243393-25241336 F
           EGN_Mt090430 20090702
          Length = 148

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 3   ENIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRG 62
           EN  +K+ SK ++  + +++ + +++  +LK+  + D+  L+ I CYRGIRH D LP RG
Sbjct: 70  ENKYVKDLSKRELYSLRELLSK-YLIGNDLKKLVQRDVGRLVGIQCYRGIRHADSLPCRG 128

Query: 63  QQTHTNARTCRKL 75
           Q+THTNART R +
Sbjct: 129 QRTHTNARTRRTM 141


>IMGA|Medtr4g110840.1 Ribosomal protein S13
           chr04_pseudomolecule_IMGAG_V3 25243393-25241336 F
           EGN_Mt090430 20090702
          Length = 152

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 3   ENIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRG 62
           EN  +K+ SK ++  + +++ + +++  +LK+  + D+  L+ I CYRGIRH D LP RG
Sbjct: 74  ENKYVKDLSKRELYSLRELLSK-YLIGNDLKKLVQRDVGRLVGIQCYRGIRHADSLPCRG 132

Query: 63  QQTHTNARTCRKL 75
           Q+THTNART R +
Sbjct: 133 QRTHTNARTRRTM 145


>IMGA|Medtr3g098290.1 Ribosomal protein S13
           chr03_pseudomolecule_IMGAG_V3 23752162-23751321 F
           EGN_Mt090430 20090702
          Length = 166

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 3   ENIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRG 62
           EN   KE S+ ++  +   + + +++  +L+R    +I+ L  I CYRGIRH  GLP RG
Sbjct: 85  ENKVTKELSEEELISLRDEVNK-YMIEGDLRRFNALNIKRLKEIQCYRGIRHIQGLPCRG 143

Query: 63  QQTHTNARTCR 73
           Q+T  N RT +
Sbjct: 144 QRTKNNCRTLK 154