Jatropha Genome Database

JcCB0838301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0838301.10 + phase: 2 /partial
         (51 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g129830.1 Hydroxyacid dehydrogenase/reductase; 6-phos...    57   3e-09

>IMGA|Medtr2g129830.1 Hydroxyacid dehydrogenase/reductase;
           6-phosphogluconate dehydrogenase, C-terminal-like; ;
           chr02_pseudomolecule_IMGAG_V3 31509477-31502278 E
           EGN_Mt090430 20090702
          Length = 352

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/34 (67%), Positives = 30/34 (88%)

Query: 1   DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSL 34
           D+YNPVPG+M+GVP+S+DY GGF+SKLM   L+L
Sbjct: 267 DAYNPVPGLMEGVPSSKDYNGGFASKLMAKDLNL 300