Jatropha Genome Database

JcCB0836121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0836121.10 + phase: 1 /partial
         (65 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g140170.1 Peroxisomal membrane anchor protein (Pex14p...    50   2e-07
IMGA|Medtr8g125610.1 Peroxisomal membrane anchor protein (Pex14p...    49   4e-07

>IMGA|Medtr4g140170.1 Peroxisomal membrane anchor protein (Pex14p)
          chr04_pseudomolecule_IMGAG_V3 34307500-34304278 E
          EGN_Mt090430 20090702
          Length = 264

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 1  SELAQPTNEIQQPAREEATK-QSPPSVFVNSEPMREDQVQNAVKISFTPKKLG 52
          +++ QP+N  QQ A +E+ K  S  SVFVNSEP+RE+QVQNAVK    PK  G
Sbjct: 28 ADIIQPSNMDQQNAGDESVKPISSTSVFVNSEPLREEQVQNAVKFLSHPKVKG 80


>IMGA|Medtr8g125610.1 Peroxisomal membrane anchor protein (Pex14p)
          chr08_pseudomolecule_IMGAG_V3 29342563-29349913 E
          EGN_Mt090430 20090702
          Length = 523

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 1  SELAQPTNEIQQPAREEATK-QSPPSVFVNSEPMREDQVQNAVKISFTPKKLG 52
          +++ QP+N  QQ A +E+ K  S  SVFVNSEP+RE+QVQNAVK    PK  G
Sbjct: 28 ADIIQPSNMDQQNAGDESVKPISSTSVFVNSEPLREEQVQNAVKFLSHPKVKG 80