Jatropha Genome Database

JcCB0828941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0828941.10 + phase: 0 /partial
         (116 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g141050.1 Probable ATP synthase 24 kDa subunit, mitoc...   138   7e-34

>IMGA|Medtr4g141050.1 Probable ATP synthase 24 kDa subunit,
           mitochondrial precursor, putative
           chr04_pseudomolecule_IMGAG_V3 34727798-34731758 E
           EGN_Mt090430 20090702
          Length = 244

 Score =  138 bits (348), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 81/88 (92%)

Query: 3   LIDELGAEAMMMDALEKVEKEIKKPLMRNDKKGMALLLTEFDNINKKLGIRKEDLPKYEE 62
           L D+LGAEA+M DALEK+EK++KKPL+RNDKKGM LLL EFD IN KLGIRKE+LPK+EE
Sbjct: 136 LTDDLGAEALMFDALEKIEKDLKKPLLRNDKKGMDLLLAEFDKINNKLGIRKEELPKHEE 195

Query: 63  ELENKIAKAQLEELKKDALEAMETQKKR 90
           +LE KIAKAQLEELKKDA+EAMETQKKR
Sbjct: 196 QLELKIAKAQLEELKKDAVEAMETQKKR 223