Jatropha Genome Database

JcCB0813871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0813871.10 + phase: 0 
         (202 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g016050.1 AUX/IAA protein chr08_pseudomolecule_IMGAG_...    50   5e-07

>IMGA|Medtr8g016050.1 AUX/IAA protein chr08_pseudomolecule_IMGAG_V3
           2999212-2995668 F EGN_Mt090430 20090702
          Length = 271

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 63/141 (44%), Gaps = 42/141 (29%)

Query: 27  KRADERSTEEKKLELRLGPPGEEWSLG-KTAKNSDDRVRDEFLLSLGNQQTHKFSSPENT 85
           +R+ + S EE+KLELRLGPPGEE  +  K+ KN      +E  L+LG             
Sbjct: 3   QRSHKCSLEERKLELRLGPPGEEEFVNEKSMKNVKKERDEESSLTLG------------- 49

Query: 86  RAGSVWFNQQLSQQAKAATPFLQFPPKTVTTTQQSLPVTGKESSLPCCTKVVVDLQQSAE 145
                         AK ++ FL+           S+ V     S PCCT +     Q  E
Sbjct: 50  -------------YAKDSS-FLKL---------SSMQVMDPSQSQPCCTNL-----QDGE 81

Query: 146 KKGFSQPTPANTAVPNSSQKR 166
           K  FS  +  N+A+PN SQKR
Sbjct: 82  KNTFSPSSARNSALPNRSQKR 102