Jatropha Genome Database

JcCB0812861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0812861.10 - phase: 0 /partial
         (104 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233100_69.1 Small hydrophilic plant seed protein AC233100...   103   2e-23
IMGA|Medtr3g166750.1 Small hydrophilic plant seed protein chr03_...   103   2e-23

>IMGA|AC233100_69.1 Small hydrophilic plant seed protein
          AC233100.6 300262-299531 F EGN_Mt090430 20090702
          Length = 101

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 69/92 (75%), Gaps = 21/92 (22%)

Query: 1  MATEQE-RAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKEL 59
          MA++Q+ R EL+ +A+QGETVVPGGTGGKSLEAQEHLAEGRS+GGQTR+EQLGTEG    
Sbjct: 1  MASKQQNRQELEEKAKQGETVVPGGTGGKSLEAQEHLAEGRSKGGQTRKEQLGTEG---- 56

Query: 60 GHRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
                          YQEMGRKGGLSTM+KS
Sbjct: 57 ----------------YQEMGRKGGLSTMEKS 72


>IMGA|Medtr3g166750.1 Small hydrophilic plant seed protein
          chr03_pseudomolecule_IMGAG_V3 43709742-43710473 F
          EGN_Mt090430 20090702
          Length = 101

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 69/92 (75%), Gaps = 21/92 (22%)

Query: 1  MATEQE-RAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKEL 59
          MA++Q+ R EL+ +A+QGETVVPGGTGGKSLEAQEHLAEGRS+GGQTR+EQLGTEG    
Sbjct: 1  MASKQQNRQELEEKAKQGETVVPGGTGGKSLEAQEHLAEGRSKGGQTRKEQLGTEG---- 56

Query: 60 GHRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
                          YQEMGRKGGLSTM+KS
Sbjct: 57 ----------------YQEMGRKGGLSTMEKS 72