Jatropha Genome Database

JcCB0800111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0800111.10 + phase: 0 /pseudo
         (94 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g093490.1 hypothetical protein chr01_pseudomolecule_I...    73   3e-14

>IMGA|Medtr1g093490.1 hypothetical protein
          chr01_pseudomolecule_IMGAG_V3 19016346-19012558 E
          EGN_Mt090430 20090702
          Length = 551

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/31 (90%), Positives = 31/31 (100%)

Query: 26 PCLTMHQPWASLLVYGIKRIEGRSWPAPIRG 56
          PC+TMHQPWASLLVYGIKRIEGRSWP+PI+G
Sbjct: 19 PCITMHQPWASLLVYGIKRIEGRSWPSPIKG 49