Jatropha Genome Database

JcCB0799991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0799991.10 - phase: 0 /partial
         (112 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g120820.1 UbiA prenyltransferase chr04_pseudomolecule...   102   4e-23

>IMGA|Medtr4g120820.1 UbiA prenyltransferase
           chr04_pseudomolecule_IMGAG_V3 28161711-28164983 E
           EGN_Mt090430 20090702
          Length = 365

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/79 (60%), Positives = 63/79 (79%), Gaps = 6/79 (7%)

Query: 3   VRLGTEKGSLVVKVAIVALYSLLSIFVLSNALPFTCLLLCDLTIPMGNLVVRYVEENHK- 61
           VRLGTE+G+ VVK A+++LY+LL  F LS ALP TC+ LC LT+P+GNLV+++V++NHK 
Sbjct: 261 VRLGTERGAEVVKAAVLSLYALLVAFGLSKALPLTCIFLCALTLPIGNLVIKFVQDNHKA 320

Query: 62  -----DKGKIFMAKYYCVR 75
                DK KIFMAKY+CVR
Sbjct: 321 SEKLFDKDKIFMAKYFCVR 339