Jatropha Genome Database

JcCB0796091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0796091.10 + phase: 2 /partial
         (96 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g024740.1 AtGRF5, putative chr08_pseudomolecule_IMGAG...    94   1e-20
IMGA|Medtr5g027250.1 QLQ chr05_pseudomolecule_IMGAG_V3 11063203-...    83   4e-17
IMGA|Medtr3g123080.1 hypothetical protein chr03_pseudomolecule_I...    78   1e-15
IMGA|Medtr7g126820.1 QLQ chr07_pseudomolecule_IMGAG_V3 29551657-...    67   2e-12

>IMGA|Medtr8g024740.1 AtGRF5, putative
          chr08_pseudomolecule_IMGAG_V3 4736562-4735415 E
          EGN_Mt090430 20090702
          Length = 231

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 4/95 (4%)

Query: 2  MHGVFTEARGPFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXX 61
          M    +  R  FTP+QW ELE QAL++KY+    PIP +L+  I+++LD++         
Sbjct: 1  MMSASSRNRSLFTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRIFPHP 60

Query: 62 XRPNTLPWGTFHLGFSNNTDPEPGRCRRTDGKKWR 96
               + WG F +GF    DPEPGRCRRTDGKKWR
Sbjct: 61 P----IGWGCFEMGFGRKVDPEPGRCRRTDGKKWR 91


>IMGA|Medtr5g027250.1 QLQ chr05_pseudomolecule_IMGAG_V3
          11063203-11066007 E EGN_Mt090430 20090702
          Length = 324

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 52/85 (61%), Gaps = 16/85 (18%)

Query: 12 PFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPWGT 71
          PFT SQW ELEHQALI+KY+ A + +P +LL+PIRK+L              P+   +G 
Sbjct: 16 PFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRKSLQ---------FMSHPSLGYYG- 65

Query: 72 FHLGFSNNTDPEPGRCRRTDGKKWR 96
                   DPEPGRCRRTDGKKWR
Sbjct: 66 ------KKIDPEPGRCRRTDGKKWR 84


>IMGA|Medtr3g123080.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 30781101-30775833 E
           EGN_Mt090430 20090702
          Length = 553

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 53/87 (60%), Gaps = 26/87 (29%)

Query: 12  PFTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPWGT 71
           PFT +QW ELE QA+IYKY+ A++P+PS+LL     +LD                   G 
Sbjct: 113 PFTSAQWRELERQAMIYKYLMASLPVPSHLL-----SLD-------------------GG 148

Query: 72  FHLGFS--NNTDPEPGRCRRTDGKKWR 96
           F+L  S  NNTDPE GRC+RTDGKKWR
Sbjct: 149 FNLRLSNRNNTDPEAGRCKRTDGKKWR 175


>IMGA|Medtr7g126820.1 QLQ chr07_pseudomolecule_IMGAG_V3
           29551657-29554134 E EGN_Mt090430 20090702
          Length = 384

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 13  FTPSQWMELEHQALIYKYITANVPIPSNLLIPIRKALDSAXXXXXXXXXXRPNTLPWGTF 72
           F+ SQW ELE QALI++Y+     +P  LL PI+K+L  +            +  P    
Sbjct: 79  FSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLH------HYQPTALL 132

Query: 73  HLGF--SNNTDPEPGRCRRTDGKKWR 96
             G+      DPEPGRCRRTDGKKWR
Sbjct: 133 QSGYWGRGAMDPEPGRCRRTDGKKWR 158