Jatropha Genome Database

JcCB0781371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0781371.10 + phase: 0 /pseudo/partial
         (87 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g133280.1 Sec34-like protein chr08_pseudomolecule_IMG...   128   8e-31
IMGA|Medtr8g133280.2 Sec34-like protein chr08_pseudomolecule_IMG...   126   2e-30

>IMGA|Medtr8g133280.1 Sec34-like protein
           chr08_pseudomolecule_IMGAG_V3 31714095-31702242 E
           EGN_Mt090430 20090702
          Length = 783

 Score =  128 bits (321), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 71/74 (95%)

Query: 1   ELEKSLKATCEEFIMSVTKLIVDPMLSFATKVTAVKVALSSGSQNQKVESIMAKPLKDQA 60
           ELEKSLKATCEEFIMSVTKL+VDP+LSF TKVTAVKVALS+G+ NQK+ES MAKPLK+QA
Sbjct: 635 ELEKSLKATCEEFIMSVTKLVVDPLLSFVTKVTAVKVALSTGAPNQKLESAMAKPLKNQA 694

Query: 61  FASPEKVAELVQKV 74
           FA+P+KVAELVQKV
Sbjct: 695 FATPDKVAELVQKV 708


>IMGA|Medtr8g133280.2 Sec34-like protein
           chr08_pseudomolecule_IMGAG_V3 31714095-31702242 E
           EGN_Mt090430 20090702
          Length = 781

 Score =  126 bits (317), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 70/75 (93%)

Query: 1   ELEKSLKATCEEFIMSVTKLIVDPMLSFATKVTAVKVALSSGSQNQKVESIMAKPLKDQA 60
           ELEKSLKATCEEFIMSVTKL+VDP+LSF TKVTAVKVALS+G+ NQK+ES MAKPLK+QA
Sbjct: 635 ELEKSLKATCEEFIMSVTKLVVDPLLSFVTKVTAVKVALSTGAPNQKLESAMAKPLKNQA 694

Query: 61  FASPEKVAELVQKVC 75
           FA+P+KVAELVQK  
Sbjct: 695 FATPDKVAELVQKTA 709