Jatropha Genome Database

JcCB0779721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0779721.10 - phase: 0 
         (92 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g109510.1 transducin family protein chr08_pseudomolec...   120   1e-28
IMGA|Medtr7g015120.1 WD40-like chr07_pseudomolecule_IMGAG_V3 373...    49   4e-07

>IMGA|Medtr8g109510.1 transducin family protein
          chr08_pseudomolecule_IMGAG_V3 24576369-24571666 E
          EGN_Mt090430 20090702
          Length = 471

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 64/70 (91%)

Query: 6  EALVACSDRSMGTGITVWDLETGDRLMHIPTCASPAHGLLCLRDQFLVASQVNKHGSVGG 65
          EALVACSD+SM  G+T+WD+ETG++++HIPTCASP  G+LCLR++FLVASQ+NKHGSVGG
Sbjct: 7  EALVACSDKSMRIGVTIWDMETGEKMLHIPTCASPPLGMLCLRNRFLVASQLNKHGSVGG 66

Query: 66 GAIFIWQLNK 75
          GAI +W LNK
Sbjct: 67 GAIVVWPLNK 76


>IMGA|Medtr7g015120.1 WD40-like chr07_pseudomolecule_IMGAG_V3
          3736112-3731320 F EGN_Mt090430 20090702
          Length = 441

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 8  LVACSDRSMGTGITVWDLETGDRLMHIPTCASPAHGLLCLRDQFLVASQVNKHGSVGGGA 67
          +V  S      GI  WDL TG   +   + +SP+HGL+ + D+FL +SQ+ +  S    +
Sbjct: 3  VVLASSTDASGGIGCWDLNTGSEQIRYKSFSSPSHGLVSVGDRFLASSQL-RDASTSSAS 61

Query: 68 IFIWQLNK--VIINSIFSFNYVELALN 92
          +F W  +K  V + S  S     LA N
Sbjct: 62 VFFWSWSKPQVEVKSFPSEPITPLASN 88