Jatropha Genome Database

JcCB0776371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0776371.10 + phase: 1 /partial
         (167 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g160420.1 tRNA synthetase, class II (D, K and N); S15...   291   9e-80
IMGA|Medtr7g121310.1 Aminoacyl-transfer RNA synthetase, class II...   277   2e-75
IMGA|Medtr8g105750.1 Aspartyl-tRNA synthetase bacterial/mitochon...   207   2e-54
IMGA|Medtr8g011980.1 tRNA synthetase, class II (D, K and N) chr0...   179   7e-46
IMGA|Medtr5g028440.1 Aminoacyl-transfer RNA synthetase, class II...    84   3e-17
IMGA|Medtr1g016920.1 Aspartyl-tRNA synthetase bacterial/mitochon...    79   1e-15
IMGA|Medtr8g011970.1 Asparaginyl-tRNA synthetase, cytoplasmic 2,...    67   4e-12

>IMGA|Medtr4g160420.1 tRNA synthetase, class II (D, K and N);
           S15/NS1, RNA-binding chr04_pseudomolecule_IMGAG_V3
           40657904-40652732 E EGN_Mt090430 20090702
          Length = 551

 Score =  291 bits (746), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 154/166 (92%)

Query: 2   SVTAFERISYTEAVQLLEKAVQGGKQFENKVEWGIDLASEHERYLTEVLFQKPVIVYNYP 61
           + T F R++YTEAV++LE++VQ GK+FE +VEWGIDLASEHERYLTEV +QKPVIVYNYP
Sbjct: 386 ASTPFIRLTYTEAVEILEESVQNGKKFEKEVEWGIDLASEHERYLTEVKYQKPVIVYNYP 445

Query: 62  KGIKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERLEVIQQRIVEMGLPLEPYEWY 121
           K IKAFYMRLNDD +TVAAMDVLVPKVGELIGGSQREER +VIQQR+ EM LP+EPYEWY
Sbjct: 446 KDIKAFYMRLNDDLETVAAMDVLVPKVGELIGGSQREERYDVIQQRLEEMDLPVEPYEWY 505

Query: 122 LDLRRFGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 167
           +DLRR+GTVKH GFGLGFERMILFATG++NIRDVIPFPRYPGRADL
Sbjct: 506 IDLRRYGTVKHAGFGLGFERMILFATGLENIRDVIPFPRYPGRADL 551


>IMGA|Medtr7g121310.1 Aminoacyl-transfer RNA synthetase, class II
           chr07_pseudomolecule_IMGAG_V3 28534222-28537955 E
           EGN_Mt090430 20090702
          Length = 603

 Score =  277 bits (708), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/171 (78%), Positives = 151/171 (88%), Gaps = 5/171 (2%)

Query: 2   SVTAFERISYTEAVQLLEKAVQGGKQFENKVEWGIDLASEHERYLTEVLFQK-PVIVYNY 60
           + T F R++YTEAV++LE+AV+ G +FEN+V+WGIDLASEHERYLTEV +QK PVIVYNY
Sbjct: 433 ASTPFIRLTYTEAVEILEEAVKNGTEFENEVKWGIDLASEHERYLTEVKYQKKPVIVYNY 492

Query: 61  PKGI----KAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERLEVIQQRIVEMGLPLE 116
           PKG     KAFYMRLNDD KTVAAMDVLVP VGELIGG QREER +VIQQR+ EM LP+E
Sbjct: 493 PKGEDIKGKAFYMRLNDDLKTVAAMDVLVPNVGELIGGGQREERYDVIQQRLKEMDLPVE 552

Query: 117 PYEWYLDLRRFGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 167
           PYEWY+DLRR+GTVKH GFGLGFERMILFATG+ NIRDVIPFPRYPGRADL
Sbjct: 553 PYEWYIDLRRYGTVKHAGFGLGFERMILFATGLKNIRDVIPFPRYPGRADL 603


>IMGA|Medtr8g105750.1 Aspartyl-tRNA synthetase
           bacterial/mitochondrial type; Nucleic acid-binding,
           OB-fold, subgroup chr08_pseudomolecule_IMGAG_V3
           23433245-23426495 E EGN_Mt090430 20090702
          Length = 559

 Score =  207 bits (527), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/178 (59%), Positives = 128/178 (71%), Gaps = 21/178 (11%)

Query: 8   RISYTEAVQLLEKAVQGGKQFENKVEWGIDLASEHERYLTEVLFQK-PVIVYNYPKG--- 63
           +I+YTEAV LL +A    K+FE  V+WG DL SEHERY+TE  F   PVI+ +YPK    
Sbjct: 385 QITYTEAVDLLSRA---NKKFEFPVKWGCDLQSEHERYITEEAFGGCPVIIRDYPKACYF 441

Query: 64  --------------IKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERLEVIQQRIV 109
                         IKAFYMR NDD KTVAAMD+LVPK+GELIGGSQREERLE ++ R+ 
Sbjct: 442 SPSFSVHTIVQAADIKAFYMRQNDDGKTVAAMDMLVPKIGELIGGSQREERLEHLEARLD 501

Query: 110 EMGLPLEPYEWYLDLRRFGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGRADL 167
           ++ L  + Y WYLDLRR+G+V H GFGLGFER++ FATG+DNIRDVIPFPR PG A+ 
Sbjct: 502 DLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPFPRTPGSAEF 559


>IMGA|Medtr8g011980.1 tRNA synthetase, class II (D, K and N)
           chr08_pseudomolecule_IMGAG_V3 1764832-1761068 E
           EGN_Mt090430 20090702
          Length = 633

 Score =  179 bits (453), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 88/160 (55%), Positives = 114/160 (71%), Gaps = 3/160 (1%)

Query: 7   ERISYTEAVQLLEKAVQGGKQFENKVEWGIDLASEHERYLTEVLFQKPVIVYNYPKGIKA 66
           E ISY EA+ +  KA    ++ + K + G+ L S+H  YL + +++KPVI+++YPK  K 
Sbjct: 476 EMISYDEALDVFIKAED--EKSKTKFDSGLKLTSDHLSYLVDAIYKKPVIIHSYPKEAKP 533

Query: 67  FYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERLEVIQQRIVEMGLPLEPYEWYLDLRR 126
           FY+R+NDD KTVAA D +VPKVG +I GSQ EERL VI  RI E+GLP E YEWYLDL R
Sbjct: 534 FYVRVNDD-KTVAAFDFVVPKVGTIISGSQNEERLTVINSRITELGLPREKYEWYLDLCR 592

Query: 127 FGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGRAD 166
            GTVK  GF L F+ M+LF TG+ N+RDVIPFPR   +A+
Sbjct: 593 NGTVKRSGFTLRFDLMVLFTTGLSNVRDVIPFPRSYDKAN 632


>IMGA|Medtr5g028440.1 Aminoacyl-transfer RNA synthetase, class II
           chr05_pseudomolecule_IMGAG_V3 11735217-11738772 E
           EGN_Mt090430 20090702
          Length = 590

 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 13/162 (8%)

Query: 8   RISYTEAVQLLEKAVQGGKQFENKVEWGIDLASEHERYLTEVLFQKP----VIVYNYPKG 63
           R++Y E +++L       K+   ++E   DL +E ER L +++ +K      I++ YP  
Sbjct: 434 RLTYEEGIEML-------KEVGVEIEPFGDLNTEAERKLGQLVLEKYEKEFCILHRYPLA 486

Query: 64  IKAFY-MRLNDDSKTVAAMDVLVPKVGELIGGSQREERLEVIQQRIVEMGLPLEPYEWYL 122
           ++ FY M  +DD     + DV + +  E+I G+QR    +++++R    G+ ++   +Y+
Sbjct: 487 VRPFYSMPCSDDQNYSNSFDVFI-RGEEIISGAQRIHEPKLLEERTQACGINVDAISYYI 545

Query: 123 DLRRFGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGR 164
           +  R+G   H GFG G ER+++   G+DNIR    FPR P R
Sbjct: 546 EAFRYGAPLHGGFGAGLERVVMLFCGLDNIRMTSLFPRDPKR 587


>IMGA|Medtr1g016920.1 Aspartyl-tRNA synthetase
           bacterial/mitochondrial type; Nucleic acid-binding,
           OB-fold, subgroup chr01_pseudomolecule_IMGAG_V3
           3443141-3437816 E EGN_Mt090430 20090702
          Length = 541

 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 13/162 (8%)

Query: 8   RISYTEAVQLLEKAVQGGKQFENKVEWGIDLASEHERYLTEVLFQKP----VIVYNYPKG 63
           R++Y E +Q+L       K+   ++E   DL +E ER L +++ +K      I++ YP  
Sbjct: 385 RLTYEEGIQML-------KEVGVEIEPFGDLNTEAERKLGQLVLEKYGTEFYILHRYPLA 437

Query: 64  IKAFY-MRLNDDSKTVAAMDVLVPKVGELIGGSQREERLEVIQQRIVEMGLPLEPYEWYL 122
           ++ FY M   D+     + DV + +  E+I G+QR    E +++R    G+ ++    Y+
Sbjct: 438 VRPFYTMPCYDNPNYSNSFDVFI-RGEEIISGAQRIHVPEFLEERAQACGIEVKTISAYI 496

Query: 123 DLRRFGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGR 164
           D  R+G   H GFG+G ER+++   G++NIR    +PR P R
Sbjct: 497 DSFRYGVPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLR 538


>IMGA|Medtr8g011970.1 Asparaginyl-tRNA synthetase, cytoplasmic 2,
           putative chr08_pseudomolecule_IMGAG_V3 1758078-1757658 H
           EGN_Mt090430 20090702
          Length = 74

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 27/93 (29%)

Query: 68  YMRLNDDSKTVAAMDVLVPKVGELIGGSQREERLEVIQQRIVEMGLPLEPYEWYLDLRRF 127
           ++R+NDD K VAA D +V   G +I GSQ EERL      I E+GLP   YEW       
Sbjct: 2   FVRVNDD-KNVAAFDHVV---GTIISGSQNEERL-----IITELGLPRVKYEW------- 45

Query: 128 GTVKHCGFGLGFERMILFATGIDNIRDVIPFPR 160
                      F+ M+LF TG+ N+RDVIPFPR
Sbjct: 46  -----------FDLMVLFTTGLSNVRDVIPFPR 67