Jatropha Genome Database
- JcCB0762541.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0762541.10 + phase: 2 /partial
(69 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g088990.1 RNA-binding region RNP-1 (RNA recognition m... 125 8e-30
IMGA|Medtr5g023040.1 Nucleotide-binding, alpha-beta plait chr05_... 114 1e-26
IMGA|AC202489_30.1 RNA-binding region RNP-1 (RNA recognition mot... 49 7e-07
IMGA|Medtr3g036670.1 Carbohydrate kinase, PfkB; Nucleotide-bindi... 46 4e-06
IMGA|Medtr4g155980.1 RNA-binding region RNP-1 (RNA recognition m... 46 6e-06
IMGA|Medtr5g105300.1 Nucleotide-binding, alpha-beta plait chr05_... 45 7e-06
IMGA|Medtr7g092780.1 Nucleotide-binding, alpha-beta plait chr07_... 45 9e-06
IMGA|Medtr7g092780.2 Nucleotide-binding, alpha-beta plait chr07_... 45 9e-06
>IMGA|Medtr8g088990.1 RNA-binding region RNP-1 (RNA recognition
motif) chr08_pseudomolecule_IMGAG_V3 19026674-19029671 E
EGN_Mt090430 20090702
Length = 263
Score = 125 bits (313), Expect = 8e-30, Method: Composition-based stats.
Identities = 58/68 (85%), Positives = 64/68 (94%)
Query: 2 DAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEA 61
+A NPGNTLYVTGLS+RVT+RDLE+HFSKEGKVASCFLVVEPRTRISRGFAFVTMD+ E
Sbjct: 49 NATNPGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHED 108
Query: 62 ANRCVKHL 69
A RC+KHL
Sbjct: 109 AERCIKHL 116
>IMGA|Medtr5g023040.1 Nucleotide-binding, alpha-beta plait
chr05_pseudomolecule_IMGAG_V3 9026869-9029718 E
EGN_Mt090430 20090702
Length = 303
Score = 114 bits (286), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/63 (88%), Positives = 60/63 (95%)
Query: 7 GNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCV 66
G+TLYVTGLS+RVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMD E ANRC+
Sbjct: 130 GDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCI 189
Query: 67 KHL 69
K+L
Sbjct: 190 KYL 192
>IMGA|AC202489_30.1 RNA-binding region RNP-1 (RNA recognition motif)
AC202489.10 129376-123921 E EGN_Mt090430 20090702
Length = 796
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 10 LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCVKHL 69
++V GL TE DL + FS+ G V L++ P+T+ ++GFAF+ +NVE A R V L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
>IMGA|Medtr3g036670.1 Carbohydrate kinase, PfkB; Nucleotide-binding,
alpha-beta plait chr03_pseudomolecule_IMGAG_V3
9736282-9740531 E EGN_Mt090430 20090702
Length = 453
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 6 PGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRC 65
P L+V G+S E+ L + FSK G+V ++++ + S+GF FVT + VE A+
Sbjct: 48 PNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSA 107
Query: 66 VKHL 69
++ L
Sbjct: 108 IQAL 111
>IMGA|Medtr4g155980.1 RNA-binding region RNP-1 (RNA recognition
motif) chr04_pseudomolecule_IMGAG_V3 38572771-38570820 E
EGN_Mt090430 20090702
Length = 476
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 6 PGNT--LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAAN 63
PG T ++V GL++ VTE D +++F + G + ++ + T+ RGF F+T D+ EA +
Sbjct: 85 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 144
Query: 64 R 64
+
Sbjct: 145 Q 145
>IMGA|Medtr5g105300.1 Nucleotide-binding, alpha-beta plait
chr05_pseudomolecule_IMGAG_V3 42290661-42295471 E
EGN_Mt090430 20090702
Length = 479
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 6 PGNT--LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAAN 63
PG T ++V GL++ VTE D +++F + G + ++ + T+ RGF F+T D+ EA +
Sbjct: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
Query: 64 R 64
+
Sbjct: 162 Q 162
>IMGA|Medtr7g092780.1 Nucleotide-binding, alpha-beta plait
chr07_pseudomolecule_IMGAG_V3 20503176-20497837 E
EGN_Mt090430 20090702
Length = 824
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 10 LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCVKHL 69
++V GL TE DL + FSK G++ + V P+T+ ++GFA + + VE R + L
Sbjct: 196 VFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAEL 255
>IMGA|Medtr7g092780.2 Nucleotide-binding, alpha-beta plait
chr07_pseudomolecule_IMGAG_V3 20503176-20497837 E
EGN_Mt090430 20090702
Length = 729
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 10 LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCVKHL 69
++V GL TE DL + FSK G++ + V P+T+ ++GFA + + VE R + L
Sbjct: 196 VFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAEL 255