Jatropha Genome Database

JcCB0760911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0760911.10 - phase: 0 /partial
         (68 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g109990.1 Zinc finger, CCCH-type chr08_pseudomolecule...    50   2e-07
IMGA|Medtr7g089530.1 Zinc finger, CCCH-type; Sugar transporter s...    48   1e-06
IMGA|Medtr8g139290.1 Zinc finger, CCCH-type chr08_pseudomolecule...    48   1e-06
IMGA|Medtr8g139280.1 Zinc finger, CCCH-type chr08_pseudomolecule...    47   2e-06

>IMGA|Medtr8g109990.1 Zinc finger, CCCH-type
           chr08_pseudomolecule_IMGAG_V3 24821248-24817227 E
           EGN_Mt090430 20090702
          Length = 573

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 1   FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVK 34
           FYMKTG CKFG  CKF+HPI R    QA ++ V+
Sbjct: 242 FYMKTGSCKFGFNCKFNHPIRRKNQNQAVREKVR 275


>IMGA|Medtr7g089530.1 Zinc finger, CCCH-type; Sugar transporter
           superfamily chr07_pseudomolecule_IMGAG_V3
           19719766-19712854 E EGN_Mt090430 20090702
          Length = 428

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 1   FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
           FYMKTG+CKFG  C+FHHP  R+ P         L+  GLP R
Sbjct: 296 FYMKTGDCKFGAVCRFHHPRERTIPA----PDCVLSPLGLPLR 334


>IMGA|Medtr8g139290.1 Zinc finger, CCCH-type
           chr08_pseudomolecule_IMGAG_V3 33956668-33960343 E
           EGN_Mt090430 20090702
          Length = 511

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 2   YMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
           YMKTG+CKFG  C++HHP +  AP       V L+  GLP R
Sbjct: 342 YMKTGDCKFGSTCRYHHPPDMGAPK------VNLSPIGLPLR 377


>IMGA|Medtr8g139280.1 Zinc finger, CCCH-type
           chr08_pseudomolecule_IMGAG_V3 33956668-33959667 E
           EGN_Mt090430 20090702
          Length = 379

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 6/42 (14%)

Query: 2   YMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
           YMKTG+CKFG  C++HHP +  AP       V L+  GLP R
Sbjct: 342 YMKTGDCKFGSTCRYHHPPDMGAPK------VNLSPIGLPLR 377