Jatropha Genome Database

JcCB0756221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0756221.10 + phase: 0 /partial
         (382 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g067700.1 GatB, central region chr05_pseudomolecule_I...   333   1e-91

>IMGA|Medtr5g067700.1 GatB, central region
           chr05_pseudomolecule_IMGAG_V3 24040370-24047208 E
           EGN_Mt090430 20090702
          Length = 546

 Score =  333 bits (853), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/190 (83%), Positives = 174/190 (91%), Gaps = 4/190 (2%)

Query: 195 FFQVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAELQRMVRYLGVSNGNMQEGSLRCDVNV 254
           + QVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAELQR+VRYLGVSNGNMQEGSLRCDVNV
Sbjct: 203 YSQVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNV 262

Query: 255 SIRPIGQSEFGTKVEIKNLNSFSSINRAIDFEISRQVLLHSQGQVDSIVQETRLWEEGAQ 314
           S+RPIGQS+FGTKVE+KNLNSF+S++RAIDFEI+RQV LHSQGQ D IVQETR WEEG+Q
Sbjct: 263 SVRPIGQSKFGTKVEVKNLNSFASMSRAIDFEIARQVQLHSQGQADQIVQETRSWEEGSQ 322

Query: 315 K----TVSMRKKEGLSDYRYFPEPDLPEVIFTKEYVDSIKNSLPDLPEIKRRRYENMGLG 370
                T++MRKKEGL+DYRYFPEPDLP VI  +EYVD IKNSLP+LPE KRRRYE MGLG
Sbjct: 323 ASTILTITMRKKEGLADYRYFPEPDLPSVILYQEYVDGIKNSLPELPEGKRRRYEKMGLG 382

Query: 371 MQDVLFLAND 380
           MQDVLFLAND
Sbjct: 383 MQDVLFLAND 392



 Score =  262 bits (669), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 132/139 (94%)

Query: 1   YEAIIGIETHVQLSTLTKAFCSCPYNYGAQPNSSICPICMGLPGALPVLNSKVIEFAVKL 60
           YE IIGIETHVQLST TKAFC+CPYNYG+ PN+SICP+CMGLPGALPVLNSKVIEFAVKL
Sbjct: 64  YEPIIGIETHVQLSTNTKAFCNCPYNYGSFPNTSICPVCMGLPGALPVLNSKVIEFAVKL 123

Query: 61  GLALNCKLSLNSKFDRKQYFYPDLPKGYQISQFDIPIGTGGYIDLDLPMEFGGGHRRFGI 120
           GLALNC+L+ +SKFDRKQYFYPDLPKGYQISQFD+PI + G++D+D+P+E+GGGH+RFGI
Sbjct: 124 GLALNCELAFDSKFDRKQYFYPDLPKGYQISQFDVPIASSGFLDVDIPLEYGGGHKRFGI 183

Query: 121 TRLHMEEDAGKLLHSGNGS 139
           TR+HMEEDAGKLLH+ NG+
Sbjct: 184 TRVHMEEDAGKLLHTENGN 202