Jatropha Genome Database

JcCB0747201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0747201.10 - phase: 2 /partial
         (109 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g149470.1 Glutamate--cysteine ligase, plant chr04_pse...   219   2e-58
IMGA|Medtr5g010350.1 Glutamate--cysteine ligase, GCS2 chr05_pseu...   186   3e-48
IMGA|Medtr5g010350.3 Glutamate--cysteine ligase, GCS2 chr05_pseu...   125   4e-30
IMGA|Medtr5g010330.1 Glutamate--cysteine ligase, GCS2 chr05_pseu...   107   1e-24
IMGA|Medtr5g010340.1 Glutamate--cysteine ligase, GCS2 chr05_pseu...    69   8e-13
IMGA|Medtr5g010350.2 Glutamate--cysteine ligase, GCS2 chr05_pseu...    60   2e-10

>IMGA|Medtr4g149470.1 Glutamate--cysteine ligase, plant
           chr04_pseudomolecule_IMGAG_V3 37162522-37169667 F
           EGN_Mt090430 20090702
          Length = 508

 Score =  219 bits (559), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 101/109 (92%), Positives = 105/109 (96%), Gaps = 2/109 (1%)

Query: 1   FEQYVDYALDVPMYFVYRKKKYIDCTGMTFRDFMAGKLPCIPGELPTLNDWENHLTTIFP 60
           FEQYVD+ALDVPMYFVYRKKKYIDCTGMTFRDF+AGKLPCIPGELPTLNDWENHLTTIFP
Sbjct: 311 FEQYVDFALDVPMYFVYRKKKYIDCTGMTFRDFLAGKLPCIPGELPTLNDWENHLTTIFP 370

Query: 61  EVRLKRYLEMRGADGGPWRRLCALPAFW--IIYDEISLQHVLDMVADWT 107
           EVRLKRYLEMRGADGGPWRRLCALPAFW  I+YDE+SLQ VLDM ADWT
Sbjct: 371 EVRLKRYLEMRGADGGPWRRLCALPAFWVGILYDEVSLQRVLDMTADWT 419


>IMGA|Medtr5g010350.1 Glutamate--cysteine ligase, GCS2
           chr05_pseudomolecule_IMGAG_V3 2517014-2520650 E
           EGN_Mt090430 20090702
          Length = 512

 Score =  186 bits (471), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 97/109 (88%), Gaps = 2/109 (1%)

Query: 1   FEQYVDYALDVPMYFVYRKKKYIDCTGMTFRDFMAGKLPCIPGELPTLNDWENHLTTIFP 60
           FEQ+VDYALDVPM FVYRK KYI C GM+FRDFMAGKLP I G++PT++DWENHLTTIFP
Sbjct: 315 FEQFVDYALDVPMIFVYRKNKYIPCGGMSFRDFMAGKLPAIRGQVPTISDWENHLTTIFP 374

Query: 61  EVRLKRYLEMRGADGGPWRRLCALPAFWI--IYDEISLQHVLDMVADWT 107
           EVRLK+Y+EMRGADGGP   LCALPAFW+  +YDE+SL +VLDM+ADWT
Sbjct: 375 EVRLKKYMEMRGADGGPLNMLCALPAFWVGLLYDEVSLHNVLDMIADWT 423


>IMGA|Medtr5g010350.3 Glutamate--cysteine ligase, GCS2
           chr05_pseudomolecule_IMGAG_V3 2518866-2520650 E
           EGN_Mt090430 20090702
          Length = 165

 Score =  125 bits (315), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 68/76 (89%), Gaps = 2/76 (2%)

Query: 34  MAGKLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWI--IY 91
           MAGKLP I G++PT++DWENHLTTIFPEVRLK+Y+EMRGADGGP   LCALPAFW+  +Y
Sbjct: 1   MAGKLPAIRGQVPTISDWENHLTTIFPEVRLKKYMEMRGADGGPLNMLCALPAFWVGLLY 60

Query: 92  DEISLQHVLDMVADWT 107
           DE+SL +VLDM+ADWT
Sbjct: 61  DEVSLHNVLDMIADWT 76


>IMGA|Medtr5g010330.1 Glutamate--cysteine ligase, GCS2
          chr05_pseudomolecule_IMGAG_V3 2509119-2511661 E
          EGN_Mt090430 20090702
          Length = 65

 Score =  107 bits (267), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 54/62 (87%)

Query: 1  FEQYVDYALDVPMYFVYRKKKYIDCTGMTFRDFMAGKLPCIPGELPTLNDWENHLTTIFP 60
          FEQ++DYALDVPM F+YRK +YI C GM+FRDFMAGKLP   G+LPTL DWENHL+TI+P
Sbjct: 3  FEQFIDYALDVPMVFIYRKNRYIACGGMSFRDFMAGKLPAFQGQLPTLRDWENHLSTIYP 62

Query: 61 EV 62
          EV
Sbjct: 63 EV 64


>IMGA|Medtr5g010340.1 Glutamate--cysteine ligase, GCS2
           chr05_pseudomolecule_IMGAG_V3 2511663-2513601 F
           EGN_Mt090430 20090702
          Length = 139

 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 40/49 (81%), Gaps = 2/49 (4%)

Query: 61  EVRLKRYLEMRGADGGPWRRLCALPAFWI--IYDEISLQHVLDMVADWT 107
           +VRL+RY+EMRGAD  P   LCA PAFW+  +YDE+SL +VLDM+ADWT
Sbjct: 2   QVRLRRYMEMRGADVVPQSMLCAPPAFWVGLLYDEVSLHNVLDMIADWT 50


>IMGA|Medtr5g010350.2 Glutamate--cysteine ligase, GCS2
           chr05_pseudomolecule_IMGAG_V3 2517014-2520650 E
           EGN_Mt090430 20090702
          Length = 372

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/31 (80%), Positives = 27/31 (87%)

Query: 1   FEQYVDYALDVPMYFVYRKKKYIDCTGMTFR 31
           FEQ+VDYALDVPM FVYRK KYI C GM+FR
Sbjct: 315 FEQFVDYALDVPMIFVYRKNKYIPCGGMSFR 345