Jatropha Genome Database

JcCB0746061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0746061.10 + phase: 0 /partial
         (174 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g025290.1 Carotenoid oxygenase chr05_pseudomolecule_I...   248   1e-66
IMGA|Medtr5g025250.1 Carotenoid oxygenase chr05_pseudomolecule_I...   233   3e-62
IMGA|Medtr5g025270.1 Carotenoid oxygenase chr05_pseudomolecule_I...   231   2e-61

>IMGA|Medtr5g025290.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10116366-10118405 E
           EGN_Mt090430 20090702
          Length = 581

 Score =  248 bits (633), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 146/172 (84%), Gaps = 4/172 (2%)

Query: 5   FLMVRPVFPPRLWNQQKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKD 64
           F M RP F       +KYAVF DIQ+GMNP++MI  GGSPVG DP+KV RIGI+PRYA D
Sbjct: 319 FSMTRPSFLHDFAITKKYAVFTDIQLGMNPLDMI-SGGSPVGSDPSKVSRIGILPRYASD 377

Query: 65  ESEMRWFDVPGFNLIHAINAWDEED---AVVILAPNILSAEHTLERMELVHALVEKVRID 121
           ES+M+WFDVPGFN++HAIN+WD ED    V ++APN+LS EHT+ER+ELVHA++EKV+I+
Sbjct: 378 ESKMKWFDVPGFNIMHAINSWDGEDDEETVTLIAPNVLSIEHTMERLELVHAMIEKVKIN 437

Query: 122 LKTGIVTRNPVSARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDV 173
           +KTGIV+R P+SARNLDFAVIN  Y+GKKN++VYAAIG+PMPKI+GVVK+DV
Sbjct: 438 IKTGIVSRQPLSARNLDFAVINGDYMGKKNRFVYAAIGNPMPKISGVVKIDV 489


>IMGA|Medtr5g025250.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10093326-10091325 E
           EGN_Mt090430 20090702
          Length = 578

 Score =  233 bits (595), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/171 (64%), Positives = 141/171 (82%), Gaps = 3/171 (1%)

Query: 5   FLMVRPVFPPRLWNQQKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKD 64
           F M RP F       +KYAVFADIQ+ MNP+ MIFGG SPV  DP+KV RIGI+PRYA D
Sbjct: 317 FSMKRPSFLHDFAITKKYAVFADIQLEMNPLGMIFGG-SPVRSDPSKVSRIGILPRYAND 375

Query: 65  ESEMRWFDVPGFNLIHAINAWDEEDA--VVILAPNILSAEHTLERMELVHALVEKVRIDL 122
           ES+M+WFDVPGFN++H INAWDEED   V ++A NILS +H +ERM+L+HA++EKVRI++
Sbjct: 376 ESKMKWFDVPGFNIMHTINAWDEEDGGTVTLVATNILSVQHVMERMDLIHAMIEKVRINV 435

Query: 123 KTGIVTRNPVSARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDV 173
           +TG+VTR P+SARNLD AVIN  ++GKK+++VYAAIG+PMPK +GVVK+DV
Sbjct: 436 ETGLVTRQPLSARNLDLAVINNDFLGKKSRFVYAAIGNPMPKFSGVVKIDV 486


>IMGA|Medtr5g025270.1 Carotenoid oxygenase
           chr05_pseudomolecule_IMGAG_V3 10102084-10100345 E
           EGN_Mt090430 20090702
          Length = 579

 Score =  231 bits (588), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 141/171 (82%), Gaps = 3/171 (1%)

Query: 5   FLMVRPVFPPRLWNQQKYAVFADIQIGMNPVEMIFGGGSPVGLDPTKVPRIGIIPRYAKD 64
           F M RP F       +KYA+FADIQ+ +NP++MIFGG SPV  DP+KVPRIGI+PRYA +
Sbjct: 318 FSMKRPSFLHDFAITKKYALFADIQLEINPLDMIFGG-SPVRSDPSKVPRIGILPRYADN 376

Query: 65  ESEMRWFDVPGFNLIHAINAWDEEDA--VVILAPNILSAEHTLERMELVHALVEKVRIDL 122
           ES+M+WFDVPG N++H INAWDEED   V I+APNIL  EH +ER+EL+H ++EKVRI++
Sbjct: 377 ESKMKWFDVPGLNIMHLINAWDEEDGKTVTIVAPNILCVEHMMERLELIHEMIEKVRINV 436

Query: 123 KTGIVTRNPVSARNLDFAVINPAYVGKKNKYVYAAIGDPMPKITGVVKLDV 173
           +TGIVTR P+SARNLD AVIN  ++GKK++++YAAIG+PMPK +GVVK+DV
Sbjct: 437 ETGIVTRQPLSARNLDLAVINNEFLGKKHRFIYAAIGNPMPKFSGVVKIDV 487