Jatropha Genome Database

JcCB0740621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0740621.10 - phase: 0 
         (82 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g089410.1 Ras GTPase chr08_pseudomolecule_IMGAG_V3 19...   114   1e-26
IMGA|Medtr5g022500.1 Ras GTPase chr05_pseudomolecule_IMGAG_V3 87...   109   4e-25
IMGA|Medtr4g098540.1 Ras GTPase chr04_pseudomolecule_IMGAG_V3 21...   101   8e-23
IMGA|Medtr2g132410.1 Ras GTPase chr02_pseudomolecule_IMGAG_V3 32...    89   7e-19
IMGA|Medtr6g099230.1 Ras small GTPase, Rab type chr06_pseudomole...    80   2e-16

>IMGA|Medtr8g089410.1 Ras GTPase chr08_pseudomolecule_IMGAG_V3
           19209541-19213679 F EGN_Mt090430 20090702
          Length = 197

 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 59/82 (71%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   DDKQFF+DHPGAVPIT  QGEELRKLINAPAYIECSSK+QQNVK VFDAAIR
Sbjct: 116 VGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIR 175

Query: 61  VVLXXXXXXXXXXXXXXXCSIL 82
           VVL               CSIL
Sbjct: 176 VVLQPPKQKKKKSKAQKACSIL 197


>IMGA|Medtr5g022500.1 Ras GTPase chr05_pseudomolecule_IMGAG_V3
           8775550-8778414 E EGN_Mt090430 20090702
          Length = 197

 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 58/82 (70%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   DDKQF IDHPGAVPIT  QGEELRKLINAPAYIECSSK+Q+NVK VFDAAIR
Sbjct: 116 VGTKLDLRDDKQFCIDHPGAVPITTAQGEELRKLINAPAYIECSSKSQENVKAVFDAAIR 175

Query: 61  VVLXXXXXXXXXXXXXXXCSIL 82
           VVL               CSIL
Sbjct: 176 VVLQPPKQKKKKNKAQKACSIL 197


>IMGA|Medtr4g098540.1 Ras GTPase chr04_pseudomolecule_IMGAG_V3
           21246015-21242846 F EGN_Mt090430 20090702
          Length = 197

 Score =  101 bits (252), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 54/82 (65%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   DD QFF DHPGA PIT  QGEELRKLI AP YIECSSKTQ+NVK VFD+AI+
Sbjct: 116 VGTKLDLRDDSQFFQDHPGAAPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIK 175

Query: 61  VVLXXXXXXXXXXXXXXXCSIL 82
           VVL               CSIL
Sbjct: 176 VVLQPPKQKKTKRKGQKACSIL 197


>IMGA|Medtr2g132410.1 Ras GTPase chr02_pseudomolecule_IMGAG_V3
           32003647-32002013 E EGN_Mt090430 20090702
          Length = 196

 Score = 88.6 bits (218), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 48/63 (76%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   +D+Q+ IDHPGA  IT  QGEEL++ I A  Y+ECSSKTQQNVK VFDAAI+
Sbjct: 116 VGTKLDLREDRQYLIDHPGATAITTAQGEELKRAIGAAVYLECSSKTQQNVKAVFDAAIK 175

Query: 61  VVL 63
           VVL
Sbjct: 176 VVL 178


>IMGA|Medtr6g099230.1 Ras small GTPase, Rab type
           chr06_pseudomolecule_IMGAG_V3 21851607-21855202 F
           EGN_Mt090430 20090702
          Length = 209

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 46/63 (73%)

Query: 1   MGCSMQTMDDKQFFIDHPGAVPITAVQGEELRKLINAPAYIECSSKTQQNVKGVFDAAIR 60
           +G  +   +D+ +F DH G   IT+ +GEELRK I A AYIECSSKTQQNVK VFD AI+
Sbjct: 116 VGTKLDLREDRGYFADHTGYNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 175

Query: 61  VVL 63
           VVL
Sbjct: 176 VVL 178