Jatropha Genome Database
- JcCB0736301.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0736301.10 - phase: 0 /partial
(238 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr3g123080.1 hypothetical protein chr03_pseudomolecule_I... 116 1e-26
IMGA|Medtr5g027250.1 QLQ chr05_pseudomolecule_IMGAG_V3 11063203-... 104 3e-23
IMGA|Medtr8g024740.1 AtGRF5, putative chr08_pseudomolecule_IMGAG... 100 5e-22
IMGA|Medtr7g126820.1 QLQ chr07_pseudomolecule_IMGAG_V3 29551657-... 99 3e-21
IMGA|AC233070_21.1 WRC AC233070.4 97780-96320 E EGN_Mt090430 200... 56 2e-08
IMGA|Medtr8g151300.1 hypothetical protein chr08_pseudomolecule_I... 56 2e-08
IMGA|Medtr8g151010.1 hypothetical protein chr08_pseudomolecule_I... 54 7e-08
>IMGA|Medtr3g123080.1 hypothetical protein
chr03_pseudomolecule_IMGAG_V3 30781101-30775833 E
EGN_Mt090430 20090702
Length = 553
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 108/230 (46%), Gaps = 61/230 (26%)
Query: 14 PFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQSHALKGSLELGISG- 72
PFT+AQW+ELERQ MIYKY+MAS+P+P LL +L G L +S
Sbjct: 113 PFTSAQWRELERQAMIYKYLMASLPVPSHLL----------------SLDGGFNLRLSNR 156
Query: 73 CNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCEXXXXXXXXXXXXXVELHTDSMAQLLNQ- 131
N+DPE RCKRTDGKKWRCS+DVA + +YCE VELHT++ + +Q
Sbjct: 157 NNTDPEAGRCKRTDGKKWRCSKDVALNNRYCERHMHRGRPRSRKPVELHTNNNSNSHHQI 216
Query: 132 -----------------------------KSHFPNQTNSH-----NLSIFRSPTVSAAAS 157
SHF T H +LS+ S S S
Sbjct: 217 KKARCDSNPFSVPDFTVAVPNPTTRKYGSSSHFLASTPLHPYLQSSLSLHNS---SFEGS 273
Query: 158 YDQSRNLEWFLKGETVPVASNSNQEWRYLKDGERVYNYRQGQLDSNSYLN 207
Q R LEW L G+ + + + SN W L ++N + G + +SY N
Sbjct: 274 NKQPRGLEWMLNGDPISLGA-SNSGWNPL-----MHNNKLGMTNESSYHN 317
>IMGA|Medtr5g027250.1 QLQ chr05_pseudomolecule_IMGAG_V3
11063203-11066007 E EGN_Mt090430 20090702
Length = 324
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 58/91 (63%), Gaps = 9/91 (9%)
Query: 14 PFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQSHALKGSLELGISGC 73
PFT +QWQELE Q +I+KY+ A + +PP+LL+PI K S LG G
Sbjct: 16 PFTVSQWQELEHQALIFKYLKAGLSVPPDLLLPIRK---------SLQFMSHPSLGYYGK 66
Query: 74 NSDPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
DPEP RC+RTDGKKWRC+RD PD KYC+
Sbjct: 67 KIDPEPGRCRRTDGKKWRCARDAHPDSKYCD 97
>IMGA|Medtr8g024740.1 AtGRF5, putative chr08_pseudomolecule_IMGAG_V3
4736562-4735415 E EGN_Mt090430 20090702
Length = 231
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 4 MNPSSMNVAVPFTAAQWQELERQTMIYKYMMASVPIPPELLIPITKTQSNPPSSQSHALK 63
M+ SS N ++ FT QWQELE+Q +++KYM+ PIPP+L+ I ++ SS+
Sbjct: 2 MSASSRNRSL-FTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDTSISSRIFPHP 60
Query: 64 ----GSLELGISGCNSDPEPWRCKRTDGKKWRCSRDVAPDQKYCEXXXXXXXXXXXXXVE 119
G E+G G DPEP RC+RTDGKKWRCS++ PD KYCE VE
Sbjct: 61 PIGWGCFEMGF-GRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 119
Query: 120 L 120
L
Sbjct: 120 L 120
>IMGA|Medtr7g126820.1 QLQ chr07_pseudomolecule_IMGAG_V3
29551657-29554134 E EGN_Mt090430 20090702
Length = 384
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 15 FTAAQWQELERQTMIYKYMMASVPIPPELLIPITKT--QSNPPSSQSHALKGSLELGISG 72
F+ +QWQELE Q +I++YM+ +PPELL PI K+ S+P + L+ G G
Sbjct: 79 FSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLHHYQPTALLQSGYWG 138
Query: 73 CNS-DPEPWRCKRTDGKKWRCSRDVAPDQKYCEXXXXXXXXXXXXXVELHT 122
+ DPEP RC+RTDGKKWRC+RDV QKYCE VEL T
Sbjct: 139 RGAMDPEPGRCRRTDGKKWRCARDVVAGQKYCERHMHRGRNRSRKPVELPT 189
>IMGA|AC233070_21.1 WRC AC233070.4 97780-96320 E EGN_Mt090430
20090702
Length = 331
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 76 DPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
D EP RC+RTDGKKWRC +D P+QKYCE
Sbjct: 3 DQEPHRCRRTDGKKWRCGKDTVPNQKYCE 31
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
Query: 68 LGISGCNS----------DPEPWRCKRTDGKKWRCSRDVAPDQKYC 103
L +SGCN +PEP RC+RTDGKKWRC V P QKYC
Sbjct: 183 LPVSGCNDSYLNNRNNILEPEPGRCRRTDGKKWRCKSAVLPGQKYC 228
>IMGA|Medtr8g151300.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 37276699-37275239 E
EGN_Mt090430 20090702
Length = 331
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 76 DPEPWRCKRTDGKKWRCSRDVAPDQKYCE 104
D EP RC+RTDGKKWRC +D P+QKYCE
Sbjct: 3 DQEPHRCRRTDGKKWRCGKDTVPNQKYCE 31
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
Query: 68 LGISGCNS----------DPEPWRCKRTDGKKWRCSRDVAPDQKYC 103
L +SGCN +PEP RC+RTDGKKWRC V P QKYC
Sbjct: 183 LPVSGCNDSYLNNRNNILEPEPGRCRRTDGKKWRCKSAVLPGQKYC 228
>IMGA|Medtr8g151010.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 37149734-37150240 H
EGN_Mt090430 20090702
Length = 168
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
Query: 68 LGISGCNS----------DPEPWRCKRTDGKKWRCSRDVAPDQKYC 103
+ +SGCN +PEP RC+RTDGKKWRC V P QKYC
Sbjct: 34 ISVSGCNDSYLNNTNSILEPEPGRCRRTDGKKWRCKSAVLPGQKYC 79