Jatropha Genome Database

JcCB0735771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0735771.10 + phase: 2 /TE/pseudo/partial
         (207 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g017000.1 DNA-directed DNA polymerase B chr05_pseudom...   325   1e-89

>IMGA|Medtr5g017000.1 DNA-directed DNA polymerase B
           chr05_pseudomolecule_IMGAG_V3 6066040-6054333 E
           EGN_Mt090430 20090702
          Length = 1410

 Score =  325 bits (832), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 147/190 (77%), Positives = 170/190 (89%)

Query: 1   SPMLASEWKKPGMLSHFTVVRKLEGGIFPMGFSKEVTERNTNAGSNVLAIESSERALLNR 60
           +PMLASEWK+PGML+HFTV+RKL+G IFPMGF+ EVT+RN  AGSNVL +ESSERALLNR
Sbjct: 588 TPMLASEWKRPGMLTHFTVIRKLDGNIFPMGFNTEVTDRNIKAGSNVLCVESSERALLNR 647

Query: 61  LMIALSKLDSDVLVGHNISGFDLDVLLHRAQACRVPSSMWSKIGRLKRSAMPKLTKGNSI 120
           LM+ L K+DSDVLVGHNISGFDLDVLLHR+QACRVPSSMWSK+GRL RS MPKL +    
Sbjct: 648 LMLQLHKMDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKLGRLNRSTMPKLDRRGKT 707

Query: 121 FGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLARTRLNKDRKEIAPHDIPGMF 180
           FG GA P IMSC+AGRLLCDTYLCSRDLLKEVSYSLT LA+T+LN+ RKE+APH++P MF
Sbjct: 708 FGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHEVPKMF 767

Query: 181 QTSKSLIELV 190
           QT+KSL+EL+
Sbjct: 768 QTAKSLMELI 777