Jatropha Genome Database

JcCB0733251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0733251.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g107030.1 BRCT; Zinc finger, FYVE/PHD-type chr01_pseu...   142   8e-35
IMGA|Medtr1g008810.1 Nuclear protein SET; Zinc finger, FYVE/PHD-...    51   3e-07
IMGA|Medtr5g010390.1 AT-rich interaction region; Transcription f...    50   5e-07
IMGA|Medtr1g008760.1 Zinc finger, FYVE/PHD-type chr01_pseudomole...    48   2e-06
IMGA|Medtr3g143800.1 Zinc finger, FYVE/PHD-type chr03_pseudomole...    47   4e-06

>IMGA|Medtr1g107030.1 BRCT; Zinc finger, FYVE/PHD-type
            chr01_pseudomolecule_IMGAG_V3 22500941-22493346 E
            EGN_Mt090430 20090702
          Length = 1332

 Score =  142 bits (358), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 81/117 (69%), Gaps = 2/117 (1%)

Query: 50   LYNTHAWAEKSFENLLSRAEEIVEDFTPPSDTCNSDD-TACQACGSRDRGDVMLICGDES 108
            LY T+A A++SF  L S+AEEI+E+  P  +  N DD  ACQ CGSR+RGDVMLICGDES
Sbjct: 1115 LYGTNALADRSFAKLQSKAEEIIEEVIPHEECDNDDDDVACQVCGSRERGDVMLICGDES 1174

Query: 109  GSIGCGIGMHMDCFDPPLENIPEEDWFCPNCXXXXXXXXXAKRRRKGT-SSLNTKYF 164
            GS+GCG+G H+DC DPPL  +PEEDWFCP C         A +R+KG  SS   K F
Sbjct: 1175 GSVGCGVGTHIDCCDPPLAAVPEEDWFCPKCSSTQTCSKKANKRKKGALSSSKAKSF 1231



 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 64/100 (64%), Gaps = 1/100 (1%)

Query: 59   KSFENLLSRAEEIVEDFTPPSDTCNSDDTACQACGSRDRGDVMLICGDESGSIGCGIGMH 118
            KSF    S+AEEIVE+  P    CN DD ACQ C  R+RGDVMLICGDE+GS+GCG+  H
Sbjct: 1229 KSFAKYQSKAEEIVEEVIPHVG-CNEDDVACQVCELRERGDVMLICGDETGSVGCGVATH 1287

Query: 119  MDCFDPPLENIPEEDWFCPNCXXXXXXXXXAKRRRKGTSS 158
             DC DPPL  IPEEDW CP C           +R+KG  S
Sbjct: 1288 FDCCDPPLTAIPEEDWLCPKCIRTQKCSKKVNKRKKGALS 1327


>IMGA|Medtr1g008810.1 Nuclear protein SET; Zinc finger,
           FYVE/PHD-type chr01_pseudomolecule_IMGAG_V3
           910787-914120 H EGN_Mt090430 20090702
          Length = 417

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 10/80 (12%)

Query: 83  NSDDTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNCXXX 142
           N+DD  CQ C S      +L+C +      C  G H+ C    L ++P+  WFCP+C   
Sbjct: 69  NNDDIVCQKCNSGKSPTKLLLCDN------CNKGYHLFC----LTSVPKSSWFCPSCSHN 118

Query: 143 XXXXXXAKRRRKGTSSLNTK 162
                  K+R++G+  +++K
Sbjct: 119 TNTKYVRKKRKRGSRWVSSK 138


>IMGA|Medtr5g010390.1 AT-rich interaction region; Transcription
           factor jumonji, jmjC; Transcription factor jumonji,
           JmjN; Zinc finger, C5HC2-type; Zinc finger,
           FYVE/PHD-type; chr05_pseudomolecule_IMGAG_V3
           2537448-2547205 E EGN_Mt090430 20090702
          Length = 886

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 84  SDDTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNC 139
           S D  C+ C S   G+VML+C        C  G H+ C  PPL+ IP  +W+C NC
Sbjct: 240 SRDQICEQCKSGLHGEVMLLCDR------CDKGWHIYCLSPPLKQIPLGNWYCFNC 289


>IMGA|Medtr1g008760.1 Zinc finger, FYVE/PHD-type
           chr01_pseudomolecule_IMGAG_V3 899054-899629 H
           EGN_Mt090430 20090702
          Length = 114

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 83  NSDDTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNC 139
           N DD  CQ C S      +L+C +      C  G H+ C  P L ++P+  WFCP+C
Sbjct: 23  NDDDVVCQKCNSGKSPTKLLLCDN------CDNGYHLFCLTPILPSVPKSSWFCPSC 73


>IMGA|Medtr3g143800.1 Zinc finger, FYVE/PHD-type
           chr03_pseudomolecule_IMGAG_V3 37165865-37163241 H
           EGN_Mt090430 20090702
          Length = 156

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 18/84 (21%)

Query: 59  KSFENLLSRAEEIV---EDFTPPSDTCNSDDTACQACGSRDRGDVMLICGDESGSIGCGI 115
           ++  N+++RA+  V   ED++         D  C+ CGS ++ + +L+C        C  
Sbjct: 55  RTMANIMARAKYAVVEKEDYS---------DCMCERCGSGEQPEELLLCDK------CDK 99

Query: 116 GMHMDCFDPPLENIPEEDWFCPNC 139
           G HM C  P L  +P   W CP C
Sbjct: 100 GFHMKCLRPILARVPIGSWICPKC 123