Jatropha Genome Database

JcCB0733091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0733091.10 - phase: 2 /partial
         (74 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g104190.1 Light chain 3 (LC3) chr02_pseudomolecule_IM...   138   6e-34
IMGA|Medtr2g104190.2 Light chain 3 (LC3) chr02_pseudomolecule_IM...   138   6e-34
IMGA|Medtr8g105940.1 Light chain 3 (LC3) chr08_pseudomolecule_IM...   130   1e-31
IMGA|Medtr8g134240.1 Light chain 3 (LC3) chr08_pseudomolecule_IM...    95   9e-21
IMGA|Medtr1g106030.1 Light chain 3 (LC3) chr01_pseudomolecule_IM...    91   1e-19

>IMGA|Medtr2g104190.1 Light chain 3 (LC3)
           chr02_pseudomolecule_IMGAG_V3 24505007-24508014 E
           EGN_Mt090430 20090702
          Length = 112

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 65/71 (91%), Positives = 68/71 (95%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           YLVPADLTVGQFVYVVRKRIKLS EKAIFIFV+N+LPPTA MMSAIYEENKDEDGFLYMT
Sbjct: 42  YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAGMMSAIYEENKDEDGFLYMT 101

Query: 61  YSGENTFGLSM 71
           YSGENTFG+ M
Sbjct: 102 YSGENTFGMLM 112


>IMGA|Medtr2g104190.2 Light chain 3 (LC3)
          chr02_pseudomolecule_IMGAG_V3 24505007-24508014 E
          EGN_Mt090430 20090702
          Length = 95

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 65/71 (91%), Positives = 68/71 (95%)

Query: 1  YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
          YLVPADLTVGQFVYVVRKRIKLS EKAIFIFV+N+LPPTA MMSAIYEENKDEDGFLYMT
Sbjct: 25 YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAGMMSAIYEENKDEDGFLYMT 84

Query: 61 YSGENTFGLSM 71
          YSGENTFG+ M
Sbjct: 85 YSGENTFGMLM 95


>IMGA|Medtr8g105940.1 Light chain 3 (LC3)
           chr08_pseudomolecule_IMGAG_V3 23520062-23522856 E
           EGN_Mt090430 20090702
          Length = 122

 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/68 (89%), Positives = 65/68 (95%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           YLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV NVLPPT A+MSAIY+E KDEDGFLY+T
Sbjct: 50  YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVT 109

Query: 61  YSGENTFG 68
           YSGENTFG
Sbjct: 110 YSGENTFG 117


>IMGA|Medtr8g134240.1 Light chain 3 (LC3)
           chr08_pseudomolecule_IMGAG_V3 32243783-32246370 E
           EGN_Mt090430 20090702
          Length = 118

 Score = 94.7 bits (234), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 56/68 (82%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           YLVP D++VGQF++++  R++L+  KA+FIFV+N LP TA++M++IY+  K+EDGFLYM 
Sbjct: 51  YLVPRDMSVGQFIHILSSRLRLTPGKALFIFVKNTLPQTASLMTSIYQTYKEEDGFLYMC 110

Query: 61  YSGENTFG 68
           YS E TFG
Sbjct: 111 YSSEKTFG 118


>IMGA|Medtr1g106030.1 Light chain 3 (LC3)
           chr01_pseudomolecule_IMGAG_V3 21999606-22000729 F
           EGN_Mt090430 20090702
          Length = 121

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 52/68 (76%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           YLVP DL+VG F++++  R+ L A KA+F+FV+N LP TA+MM ++Y   KDEDGFLY+ 
Sbjct: 51  YLVPRDLSVGHFIHILSSRLNLPAGKALFVFVKNTLPQTASMMDSVYRSFKDEDGFLYLY 110

Query: 61  YSGENTFG 68
           YS E TFG
Sbjct: 111 YSTEKTFG 118