Jatropha Genome Database

JcCB0704941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0704941.10 + phase: 0 /partial
         (106 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g163370.1 Prenyltransferase/squalene oxidase chr04_ps...   131   7e-32
IMGA|Medtr8g018580.1 Prenyltransferase/squalene oxidase chr08_ps...   123   2e-29
IMGA|Medtr8g018630.1 Prenyltransferase/squalene oxidase chr08_ps...   117   1e-27
IMGA|Medtr8g018520.1 Prenyltransferase/squalene oxidase chr08_ps...   116   2e-27
IMGA|Medtr5g008860.1 Prenyltransferase/squalene oxidase chr05_ps...   112   4e-26
IMGA|Medtr6g099000.1 Prenyltransferase/squalene oxidase chr06_ps...   105   6e-24
IMGA|Medtr8g018540.1 Prenyltransferase/squalene oxidase chr08_ps...    64   1e-11
IMGA|Medtr8g018530.1 mixed-amyrin synthase, putative chr08_pseud...    63   3e-11

>IMGA|Medtr4g163370.1 Prenyltransferase/squalene oxidase
           chr04_pseudomolecule_IMGAG_V3 41405062-41412055 E
           EGN_Mt090430 20090702
          Length = 771

 Score =  131 bits (330), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 68/85 (80%)

Query: 22  NLVQTAWALMGLIHGGQGEIDPAPLHLAAKLLINSQTELGDFPQQEILGVYMKNCMVHYA 81
           N+V TAWALMGLIH GQ E DP PLH AAKLLINSQ E GD+PQQEI GV+MKNCM+HY 
Sbjct: 687 NVVHTAWALMGLIHAGQAERDPTPLHRAAKLLINSQLEEGDWPQQEITGVFMKNCMLHYP 746

Query: 82  AYRNIFPLWALAEYRQHFSFSSKSV 106
            YR+I+PLWALAEYR+     S +V
Sbjct: 747 MYRDIYPLWALAEYRRRVPLPSTAV 771


>IMGA|Medtr8g018580.1 Prenyltransferase/squalene oxidase
           chr08_pseudomolecule_IMGAG_V3 3402335-3399370 E
           EGN_Mt090430 20090702
          Length = 328

 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query: 22  NLVQTAWALMGLIHGGQGEIDPAPLHLAAKLLINSQTELGDFPQQEILGVYMKNCMVHYA 81
           N+VQTAWALM LIH GQ E DP PLH A KL+IN Q E GD+PQQE+  V+MKNCM+HYA
Sbjct: 244 NIVQTAWALMALIHAGQAERDPTPLHRAVKLIINLQQEEGDWPQQELTAVFMKNCMLHYA 303

Query: 82  AYRNIFPLWALAEYRQHFSFSSKSV 106
            +R+IFP+WALAEYR+     S +V
Sbjct: 304 MFRDIFPMWALAEYRKGIMLPSIAV 328


>IMGA|Medtr8g018630.1 Prenyltransferase/squalene oxidase
           chr08_pseudomolecule_IMGAG_V3 3433864-3431665 E
           EGN_Mt090430 20090702
          Length = 244

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 65/85 (76%)

Query: 22  NLVQTAWALMGLIHGGQGEIDPAPLHLAAKLLINSQTELGDFPQQEILGVYMKNCMVHYA 81
           N+VQT+WAL+ LIH GQ E D  PLH A KL+IN Q E GD+PQQE+  V+MKNCM+HYA
Sbjct: 160 NIVQTSWALIALIHAGQAERDATPLHRAVKLIINLQQEEGDWPQQELTAVFMKNCMLHYA 219

Query: 82  AYRNIFPLWALAEYRQHFSFSSKSV 106
            +R+IFP+WALAEYR+     S +V
Sbjct: 220 MFRDIFPMWALAEYRKGIMLPSIAV 244


>IMGA|Medtr8g018520.1 Prenyltransferase/squalene oxidase
           chr08_pseudomolecule_IMGAG_V3 3367543-3364864 E
           EGN_Mt090430 20090702
          Length = 271

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 1   GERVIFHVQTRNMFLLRVRGQNLVQTAWALMGLIHGGQGEIDPAPLHLAAKLLINSQTEL 60
           GE  +F  Q   + L   R  N+VQTAWALMGLIH GQ EIDP  LH AAKL+INSQ E 
Sbjct: 167 GESYLFCSQKTYVPLEGGR-SNIVQTAWALMGLIHAGQAEIDPTTLHRAAKLIINSQLEE 225

Query: 61  GDFPQQEILGVYMKNCMVHYAAYRNIFPLWALAEYRQH 98
           GD+PQQE+ G  +K CM+HY  YR+ FP+ ALAEYR+ 
Sbjct: 226 GDWPQQELTGASLKTCMLHYPMYRDNFPMLALAEYRKR 263


>IMGA|Medtr5g008860.1 Prenyltransferase/squalene oxidase
           chr05_pseudomolecule_IMGAG_V3 1770254-1758822 E
           EGN_Mt090430 20090702
          Length = 757

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 61/83 (73%)

Query: 16  LRVRGQNLVQTAWALMGLIHGGQGEIDPAPLHLAAKLLINSQTELGDFPQQEILGVYMKN 75
           L     ++V T WA++ LI   Q + DP PLH AA  LINSQ E GDFPQ+EI+GV+ KN
Sbjct: 670 LESNRSHVVNTGWAMLALIEAEQAKRDPTPLHRAAVCLINSQMENGDFPQEEIMGVFNKN 729

Query: 76  CMVHYAAYRNIFPLWALAEYRQH 98
           CM+ YAAYRNIFP+WAL EYR+H
Sbjct: 730 CMITYAAYRNIFPIWALGEYRRH 752


>IMGA|Medtr6g099000.1 Prenyltransferase/squalene oxidase
           chr06_pseudomolecule_IMGAG_V3 21643111-21635981 H
           EGN_Mt090430 20090702
          Length = 772

 Score =  105 bits (261), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 60/75 (80%), Gaps = 1/75 (1%)

Query: 23  LVQTAWALMGLIHGGQGEIDPAPLHLAAKLLINSQTELGDFPQQEILGVYMKNCMVHYAA 82
           +V TAWA++ LI  GQ E DP PLH AAK+LINSQ E G+FPQQE++GV+ KNC ++Y+A
Sbjct: 693 VVNTAWAMLALIEAGQAERDPTPLHHAAKVLINSQMENGEFPQQEMIGVFNKNCTINYSA 752

Query: 83  YRNIFPLWALAE-YR 96
            RNIFP+WAL + YR
Sbjct: 753 CRNIFPIWALGDQYR 767


>IMGA|Medtr8g018540.1 Prenyltransferase/squalene oxidase
           chr08_pseudomolecule_IMGAG_V3 3381520-3378979 E
           EGN_Mt090430 20090702
          Length = 221

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 34/45 (75%)

Query: 22  NLVQTAWALMGLIHGGQGEIDPAPLHLAAKLLINSQTELGDFPQQ 66
           N+VQT+WALM LIH GQ E D  PLH A KL+IN Q + GD+PQQ
Sbjct: 175 NIVQTSWALMALIHAGQAERDATPLHRAVKLIINLQLKEGDWPQQ 219


>IMGA|Medtr8g018530.1 mixed-amyrin synthase, putative
           chr08_pseudomolecule_IMGAG_V3 3371840-3370122 H
           EGN_Mt090430 20090702
          Length = 75

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 66  QEILGVYMKNCMVHYAAYRNIFPLWALAEYRQHFSFSSKSV 106
           +E+ GV+MKNCM+HYA YR+IFP+WALAEYR+     S +V
Sbjct: 35  KELTGVFMKNCMLHYAMYRDIFPMWALAEYRRRILLLSSTV 75