Jatropha Genome Database

JcCB0701471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0701471.10 + phase: 0 /partial/short
         (30 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g025500.1 Zinc finger, RING-type chr03_pseudomolecule...    65   1e-11
IMGA|Medtr4g013020.1 Zinc finger, RING-type chr04_pseudomolecule...    60   2e-10
IMGA|Medtr4g012940.1 Zinc finger, RING-type chr04_pseudomolecule...    60   2e-10
IMGA|AC233659_30.2 Zinc finger, RING-type AC233659.1 131567-1270...    60   3e-10
IMGA|Medtr2g014770.1 Zinc finger, RING-type chr02_pseudomolecule...    59   8e-10
IMGA|AC233659_30.1 Zinc finger, RING-type AC233659.1 131567-1298...    58   1e-09

>IMGA|Medtr3g025500.1 Zinc finger, RING-type
          chr03_pseudomolecule_IMGAG_V3 6609079-6606066 H
          EGN_Mt090430 20090702
          Length = 257

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/29 (93%), Positives = 27/29 (93%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAA FFLFLVQWTDCHLAGALG 
Sbjct: 49 MRLSYSPAAHFFLFLVQWTDCHLAGALGL 77


>IMGA|Medtr4g013020.1 Zinc finger, RING-type
          chr04_pseudomolecule_IMGAG_V3 2447170-2443828 E
          EGN_Mt090430 20090702
          Length = 249

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAAQF LF+ +WTDCHLAGALG 
Sbjct: 42 MRLSYSPAAQFLLFMFKWTDCHLAGALGL 70


>IMGA|Medtr4g012940.1 Zinc finger, RING-type
          chr04_pseudomolecule_IMGAG_V3 2408820-2405478 E
          EGN_Mt090430 20090702
          Length = 249

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAAQF LF+ +WTDCHLAGALG 
Sbjct: 42 MRLSYSPAAQFLLFMFKWTDCHLAGALGL 70


>IMGA|AC233659_30.2 Zinc finger, RING-type AC233659.1
          131567-127095 E EGN_Mt090430 20090702
          Length = 248

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 25/29 (86%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLF VQWTDCHLAGALG 
Sbjct: 43 MRMSYSPAATLFLFFVQWTDCHLAGALGL 71


>IMGA|Medtr2g014770.1 Zinc finger, RING-type
          chr02_pseudomolecule_IMGAG_V3 3884761-3879569 F
          EGN_Mt090430 20090702
          Length = 251

 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLFLVQWTDC+LAGALG 
Sbjct: 46 MRMSYSPAAHLFLFLVQWTDCNLAGALGL 74


>IMGA|AC233659_30.1 Zinc finger, RING-type AC233659.1
          131567-129857 E EGN_Mt090430 20090702
          Length = 193

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/29 (82%), Positives = 25/29 (86%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLF VQWTDCHLAGALG 
Sbjct: 43 MRMSYSPAATLFLFFVQWTDCHLAGALGL 71