Jatropha Genome Database

JcCB0698781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0698781.10 - phase: 1 /pseudo/partial
         (207 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g139330.1 Riboflavin biosynthesis protein RibD chr08_...   169   8e-43

>IMGA|Medtr8g139330.1 Riboflavin biosynthesis protein RibD
           chr08_pseudomolecule_IMGAG_V3 33987054-33990936 E
           EGN_Mt090430 20090702
          Length = 475

 Score =  169 bits (428), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 113/171 (66%), Gaps = 4/171 (2%)

Query: 38  LTCRYSLSVNGHLLNQLGEGATECGGYYSKLLQEYDAIIVSSS-FVDMFS---IPTSQEP 93
           LT RYSLSVNG+LL+ LG G T+ GGYYS+LLQEYDA+I+SSS F +  S   +PTS+EP
Sbjct: 220 LTLRYSLSVNGNLLDSLGNGVTDSGGYYSRLLQEYDAVILSSSLFRENLSANPVPTSKEP 279

Query: 94  GAKQPLCVITVTARSSPIQIPSLAEDTASGIVVFAEKETTIRPETAQKGVETVVLDQVSL 153
           GA QP+ +I      S   IP +  +     ++F    T   PE AQ+G+E V +DQ++L
Sbjct: 280 GANQPIRIIMHKDSGSSNPIPLVINEVTDKAIIFTNCRTATTPEEAQQGIEIVSMDQINL 339

Query: 154 IEILEYCKLQGLCSVLLDLRGSLGELEGLFNDGIEHNMLQKVVVEVLPLWK 204
             IL+YC  QGLCSVLLD+RG+  E E L  +GI+   + K V EVLP+W 
Sbjct: 340 DVILDYCNRQGLCSVLLDVRGNFSEYEDLVKEGIKKKYINKFVTEVLPVWN 390