Jatropha Genome Database

JcCB0696171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0696171.10 + phase: 0 /pseudo/partial
         (83 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g010530.1 Vacuolar sorting protein 9 chr03_pseudomole...    68   1e-12

>IMGA|Medtr3g010530.1 Vacuolar sorting protein 9
           chr03_pseudomolecule_IMGAG_V3 1862449-1865027 H
           EGN_Mt090430 20090702
          Length = 211

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 1   LAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIK 60
           LA+KELQKIN +KAP++KL  I+NCC+V               P GAD+F+PVLIYVTIK
Sbjct: 141 LAEKELQKINAFKAPQEKLSTIMNCCRVINNLLLNAAMSEYV-PAGADDFIPVLIYVTIK 199

Query: 61  VR 62
            R
Sbjct: 200 AR 201