Jatropha Genome Database

JcCB0696091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0696091.10 + phase: 0 /pseudo
         (153 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g101130.1 EPS15 homology (EH); Dynamin chr05_pseudomo...    97   2e-21
IMGA|Medtr8g147510.1 EPS15 homology (EH); Dynamin chr08_pseudomo...    71   2e-13
IMGA|Medtr2g029240.1 EPS15 homology (EH); Dynamin; Actin-binding...    70   5e-13

>IMGA|Medtr5g101130.1 EPS15 homology (EH); Dynamin
          chr05_pseudomolecule_IMGAG_V3 40458795-40464475 E
          EGN_Mt090430 20090702
          Length = 557

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 46/56 (82%)

Query: 1  MEISSGPIGSCSKDNQKIYLEWFNFADSDGDGRITGNDAIKFFGMSNLSRQDLKQV 56
          ME    PIGSCSKD+Q IY +WFN ADSDGDGRITGNDA KFF MSNLSRQ LKQV
Sbjct: 1  MEFDPIPIGSCSKDHQNIYQQWFNHADSDGDGRITGNDATKFFAMSNLSRQHLKQV 56


>IMGA|Medtr8g147510.1 EPS15 homology (EH); Dynamin
          chr08_pseudomolecule_IMGAG_V3 36336789-36341831 E
          EGN_Mt090430 20090702
          Length = 542

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 41/56 (73%)

Query: 1  MEISSGPIGSCSKDNQKIYLEWFNFADSDGDGRITGNDAIKFFGMSNLSRQDLKQV 56
          M+  S  I S S ++ + Y +WF  ADSDGDGRI+GNDAIKFF +SNLSR  LKQV
Sbjct: 1  MKAVSDWIHSSSNEHIETYQQWFILADSDGDGRISGNDAIKFFALSNLSRPQLKQV 56


>IMGA|Medtr2g029240.1 EPS15 homology (EH); Dynamin; Actin-binding,
          actinin-type chr02_pseudomolecule_IMGAG_V3
          7748883-7753752 E EGN_Mt090430 20090702
          Length = 540

 Score = 69.7 bits (169), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/45 (64%), Positives = 35/45 (77%)

Query: 12 SKDNQKIYLEWFNFADSDGDGRITGNDAIKFFGMSNLSRQDLKQV 56
          SK+    Y +WFN ADSDGDGRI+GN+A KFF +SNLSR  LKQ+
Sbjct: 7  SKEETATYQQWFNLADSDGDGRISGNEATKFFALSNLSRSQLKQL 51