Jatropha Genome Database

JcCB0696011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0696011.10 - phase: 1 /partial
         (83 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g008250.2 Pyridoxal-dependent decarboxylase; chr02_ps...   134   1e-32
IMGA|Medtr2g008250.1 Pyridoxal-dependent decarboxylase; chr02_ps...   134   1e-32
IMGA|Medtr6g076610.1 EMB1075 ; carboxy-lyase, putative chr06_pse...    94   1e-20
IMGA|Medtr1g125460.1 Pyridoxal-dependent decarboxylase; chr01_ps...    47   3e-06
IMGA|Medtr1g125550.1 Pyridoxal-dependent decarboxylase; chr01_ps...    46   5e-06

>IMGA|Medtr2g008250.2 Pyridoxal-dependent decarboxylase;
           chr02_pseudomolecule_IMGAG_V3 1485157-1480748 E
           EGN_Mt090430 20090702
          Length = 311

 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 73/84 (86%), Gaps = 4/84 (4%)

Query: 4   GEEETNKNG----REIVLGRNLHTECLEVTEPDANDEHTGDKEAYMASVLARYRKTLMER 59
           G+EE   NG    REIVLGRN+HT CLEVTEP+A+DE TGD++A+MASVLARYRK+L ER
Sbjct: 46  GKEEAKINGGKEKREIVLGRNIHTTCLEVTEPEADDEITGDRDAHMASVLARYRKSLTER 105

Query: 60  TKHHLGYPYNLDFDYGALGQLQHF 83
           TK+HLGYPYNLDFDYGAL QLQHF
Sbjct: 106 TKYHLGYPYNLDFDYGALSQLQHF 129


>IMGA|Medtr2g008250.1 Pyridoxal-dependent decarboxylase;
           chr02_pseudomolecule_IMGAG_V3 1485157-1479953 E
           EGN_Mt090430 20090702
          Length = 486

 Score =  134 bits (337), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/84 (76%), Positives = 73/84 (86%), Gaps = 4/84 (4%)

Query: 4   GEEETNKNG----REIVLGRNLHTECLEVTEPDANDEHTGDKEAYMASVLARYRKTLMER 59
           G+EE   NG    REIVLGRN+HT CLEVTEP+A+DE TGD++A+MASVLARYRK+L ER
Sbjct: 46  GKEEAKINGGKEKREIVLGRNIHTTCLEVTEPEADDEITGDRDAHMASVLARYRKSLTER 105

Query: 60  TKHHLGYPYNLDFDYGALGQLQHF 83
           TK+HLGYPYNLDFDYGAL QLQHF
Sbjct: 106 TKYHLGYPYNLDFDYGALSQLQHF 129


>IMGA|Medtr6g076610.1 EMB1075 ; carboxy-lyase, putative
           chr06_pseudomolecule_IMGAG_V3 14781972-14778977 E
           EGN_Mt090430 20090702
          Length = 132

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 55/65 (84%), Gaps = 4/65 (6%)

Query: 5   EEETNKNG----REIVLGRNLHTECLEVTEPDANDEHTGDKEAYMASVLARYRKTLMERT 60
           +EE   NG    REIVLGRN+HT CLEVTEP+A+DE TGD++A+MASVLARYRK+L ERT
Sbjct: 46  KEEAKINGGKEKREIVLGRNIHTTCLEVTEPEADDEITGDRDAHMASVLARYRKSLTERT 105

Query: 61  KHHLG 65
           K+HLG
Sbjct: 106 KYHLG 110


>IMGA|Medtr1g125460.1 Pyridoxal-dependent decarboxylase;
          chr01_pseudomolecule_IMGAG_V3 27688173-27684600 E
          EGN_Mt090430 20090702
          Length = 453

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 38 TGDKEAYMASVLARYRKTLMERTKHHLGYPYNLDFDYGALGQLQHF 83
          TG+ +  +A V+  Y  TL +   H LGYP N  FDY AL  L HF
Sbjct: 51 TGESQGKLAEVINHYAGTLNQEISHLLGYPTNQSFDYSALAPLLHF 96


>IMGA|Medtr1g125550.1 Pyridoxal-dependent decarboxylase;
          chr01_pseudomolecule_IMGAG_V3 27729907-27727570 E
          EGN_Mt090430 20090702
          Length = 457

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 35 DEHTGDKEAYMASVLARYRKTLMERTKHHLGYPYNLDFDYGALGQLQHF 83
          +E  G+K+A + +++ARY +T+ +    +LGYP N DF+Y  L  L HF
Sbjct: 44 NECMGEKDANLDAIIARYAETINKYNLRNLGYPTNQDFNYDKLAPLFHF 92