Jatropha Genome Database

JcCB0695691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0695691.10 - phase: 1 /TE/partial
         (117 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g139150.1 DNA-directed DNA polymerase B chr07_pseudom...   102   4e-23

>IMGA|Medtr7g139150.1 DNA-directed DNA polymerase B
           chr07_pseudomolecule_IMGAG_V3 33216582-33210461 H
           EGN_Mt090430 20090702
          Length = 1059

 Score =  102 bits (254), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/91 (58%), Positives = 62/91 (68%), Gaps = 10/91 (10%)

Query: 27  DSYTNAIALALEXXXXXXXXXXXXRQYVHGCSLVRARKFYGYNSSEELFVKIYLYYPHDV 86
           D+YT  +A +LE            RQ+VHGCSLVRA+KFYGY S EE FVKIYLY   DV
Sbjct: 86  DAYTYMVASSLEKALKLKGSADSSRQHVHGCSLVRAKKFYGYCSFEEFFVKIYLY--PDV 143

Query: 87  SRAANLLLGGAVLDKSLKPHESHIPFILQFM 117
           +        GAVL+KSL+PHESHIPFILQF+
Sbjct: 144 A--------GAVLNKSLQPHESHIPFILQFL 166