Jatropha Genome Database

JcCB0695521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0695521.10 - phase: 0 /pseudo/partial
         (154 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233659_27.1 hypothetical protein AC233659.1 111385-114233...   125   9e-30

>IMGA|AC233659_27.1 hypothetical protein AC233659.1 111385-114233 E
           EGN_Mt090430 20090702
          Length = 188

 Score =  125 bits (314), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 70/84 (83%), Gaps = 2/84 (2%)

Query: 58  LSECNEICYKDPVFKDQQWSAYIDRSPGAASYSEECFHACVAGCGYKFEIEPDKVDQVRP 117
           L +CN++CYKDPV KDQQWSAYIDRSPG+A+YSEECFHACV+GCGYKFE++PD+ D+V P
Sbjct: 89  LEDCNQLCYKDPVLKDQQWSAYIDRSPGSATYSEECFHACVSGCGYKFEVKPDEADKVCP 148

Query: 118 NRPSKPPPSVKPAHIQKPPPIASK 141
           NRP KP P  +PA  QK  P+  +
Sbjct: 149 NRPLKPEP--EPAQKQKTKPVQKQ 170